Gene SO_2245 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_2245 
SymboldnaQ-1 
ID1169977 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand
Start bp2360593 
End bp2361231 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content49% 
IMG OID637344094 
ProductDNA polymerase III, epsilon subunit 
Protein accessionNP_717841 
Protein GI24373798 
COG category[L] Replication, recombination and repair 
COG ID[COG2176] DNA polymerase III, alpha subunit (gram-positive type) 
TIGRFAM ID[TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCAAAA CACCCGTCTA CACACCCGCC AATACCCTTG TGGTGCTCGA TTTTGAAACC 
TCGGGACTCT CACCAAACCA GGGTGCCCGT GCCATTGAGA TTGGCGCGGT ATTAATTGAG
CAAGGCCAGA TTACTACGCG TTTTTCAGAA TTAATGAATC CCGGTTTTCG GATAAACGCC
TTTATTGAAG ATTACACCGG GATCAGCAAT CAAATGCTCG CCCACGCGGC GCCCTGTGCG
GAGGTAATGG CACGCTTTGC AGAATTTATC GGCAAGCATC ATCTGGTTGC CCATAACGCC
GCCTTCGATC AGCGGTTTCT TGATGCCGAA TTTGCTCATA TCGGTCACCA ATATTCAGGT
CAATTTGGTT GTTCATTACT GCTGGCAAGA CGTTTATACC CTGAAGCCAT CAATCATCAG
TTGGCAACAT TAGTACGCCA TAAGCAGCTA CCGAACAATG GCACTTTCCA CCGTGCGCTT
GCGGACGCGG AAATGACGGG ACATTTATGG CTACGAATGC TGGCGGATCT GAAACAGGAT
TTTGCGATTG TAGAACCGCC CTTTAGCCTA ATGCAAAAAG TGATGAGCAA GAGTAAAGCC
GAAGTACCTA AGTTTCTCCG TCAGTACGCA AGGGCTTAA
 
Protein sequence
MPKTPVYTPA NTLVVLDFET SGLSPNQGAR AIEIGAVLIE QGQITTRFSE LMNPGFRINA 
FIEDYTGISN QMLAHAAPCA EVMARFAEFI GKHHLVAHNA AFDQRFLDAE FAHIGHQYSG
QFGCSLLLAR RLYPEAINHQ LATLVRHKQL PNNGTFHRAL ADAEMTGHLW LRMLADLKQD
FAIVEPPFSL MQKVMSKSKA EVPKFLRQYA RA