| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_2229 |
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| Symbol | hrpA |
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| ID | 1169965 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 2345647 |
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| End bp | 2349528 |
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| Gene Length | 3882 bp |
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| Protein Length | 1293 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637344083 |
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| Product | ATP-dependent helicase HrpA |
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| Protein accession | NP_717826 |
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| Protein GI | 24373783 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGTTTTGA ACTCTGACAA ACATCCGCTA TCGAGCGCCT TTCTCCAGCA GTGCTTTCAA
AGTGATGCCT CGCGGATCCG CCGCCGTTTA TTTAAGCTCC ATAAAGAAGC CGATTCTGAC
AAAAAAACAC AAGAATTAGC CAAACTTGCT GAGCAGGCGC AAGCAGCGTT CGAGAAAGTA
GAGCAGCGCC TGAAGGCTCG CCCTAGGATC AATTATCCTG ACAATCTGCC CGTCAGTGGC
ATGCGTGAAG ACATCGCCAA AGCCATCAGT GCAAACCAAG TGGTGATCAT TGCTGGTGAA
ACTGGTTCGG GTAAAACCAC GCAGCTGCCT AAAATCTGTT TAGAACTGGG CTTAGGCAGC
CGTGGTTTTA TTGGTCATAC CCAGCCGCGG CGGCTGGCAG CGCGCAGTGT TGCATCAAGA
GTGGCTGAAG AATTACAAAG CCCGCTTGGC GAAGTGGTAG GTTTTAAGGT GCGTTTTGCC
GATGCGCTTA AGAGTGAATC CTATATCAAG CTGATGACCG ACGGGATTTT ACTGGCGGAG
CTGACTTCAG ATCGTTATTT AGATCAATAC GATACTATCA TTATCGATGA GGCCCACGAG
CGTAGCCTTA ACATCGATTT TATCCTTGGT TACCTTAAGC AAATTCTCAA AAAGCGTCCC
GATCTTAAAA TCATTATCAC CTCGGCGACT ATCGATGTTG AGCGTTTCTC TAAGCATTTC
AATAATGCGC CGATTATTGA AGTCTCAGGC CGGACTTATC CGGTCGAAAC CCGCTATCGC
CCATTGGTGC AAGATACTGA AGCCGATCTC GACCAAATTG AAGGCATTTT TGCCGCCGTT
GATGAGCTGG TGGCCGAAGG TCTGGGCGAT ATTTTGATCT TTATGAACGG TGAGCGTGAA
ATTCGCGATA CCGCAGAGCA GCTTAATCGG CGTAATTACC GCGATACTGA GATTTTGCCG
CTCTATGCGC GCCTCTCTTA TGGTGAGCAG TCAAAGGTCT TTAGCAGCCA TACAGGACGT
CGTATCGTGC TTGCCACTAA CGTAGCGGAA ACCTCGCTGA CAGTGCCTGG TATTCGTTAT
GTGATTGACC CAGGGACAGC GCGGATCAGC CGTTATAGCT ATCGCACTAA GGTGCAGCGT
TTGCCGATTG AGCCGATTTC ACAGGCCAGT GCCAATCAGC GTCAAGGCCG CTGCGGCCGT
GTTGGCCCAG GGATTTGTAT CCGTTTATAC GATGAGGCTG ATTTTAATAA CCGCCCAGCC
TTTACCGATC CCGAAATCTT ACGAACCAAT TTGGCGTCGG TGATTTTGCA AATGCTCGCC
ATCGGCCTTG GTGATATCGC TGCTTTCCCG TTTATTGAGC CGCCCGATCC GCGCCATATT
CGCGATGGCT TCTTACTGCT TGAGGAATTA CAGGCGGTTA AGCAGCAGAA GGGCAATATT
GTGTTAACGC CGCTTGGGCG GCAGTTATCG CAAATCCCCG TCGATCCACG TTTAGCGCGT
ATGGTGATCG AGAGCCACCA ACTTGGTTGC TTAAATGAGG TGTTAGTGAT CGCCTCAGGG
CTGTCGATTC AAGATCCCCG TGAGCGGCCC ATGGATAAAA AGCAGGCGTC CGATGAAGCC
CATCGCCGCT TTGCCGATCC CCAGTCTGAT TTTGTCAGTT GGGTAAACCT ATGGCAGCAC
TTAAAAGAGC AACAAAAGGA ATTATCCGCC AGTCAGTTCC GTAAAAAGTG TCGTGATGAA
TATTTAGCCT ACCTGCGTGT GCGCGAATGG CAGGATTTAT ACACCCAGCT GAAGCAAGCT
GTGCACGACT TAAAGTGGCG CTTAAACGAC ACGCCTGCGA ACTACGATGC GCTGCACCGA
GCGCTGTTAT CAGGTCTGCT CAGCCATATT GGCTTTAAGG ACAATAACAA CGAATACTTA
GGCGCGCGTA ATCGTAAGTT TTTTGTGTTC CCAGGTTCGC CACTGGCGAA AAAAGGCCCT
AAGTGGATTA TGGCGGCGGA GCTGATGGAA ACCTCTAAGC TGTTTGCCCG CTGCTGCGCC
AAAATTGAGC CGGAATGGCT TGAACCTTTA GCGGCACATC TGATTAAAAA GAATCACCTA
GAGCCTCATT TTGAGGCGAA ACAGGGCAGT GTGATCGCCT TTGAGAATCA AGTGCTCTAT
GGCTTGACCG TGGTGCATCG CCGCCGTGTG CAATATGGGC CAATTAATCC CGTAGAAGCA
CGGGAAATCT TTATCCGTAG CGCGCTTGCC GAAGGGCAGT TACAGACCAA AGAAGCCTTT
TTTATCGCTA ACCAAAAGTT ATTGGAAGAT GTCGAAGCGC TCGAGCATAA GTCCCGTCGC
CGCGATATTT TGGTGGATGA GCAAGTGCTG ATGGACTTTT ACGAGCCGCG TATTCCCGAA
GGCATCTACA ACGCGCCTAA GTTCTTTAGC TGGTGGAAGG AAGCGCGCTG TACTCAGCCA
GATCTGCTCG ATTTTAACAA ATCTCTGTTG ATGCAGCGCA GCGCCGATCA TATCTCTGCG
CTCGATTTCC CCGACACTTG GCATAAGGGC AATATTCGCC TGCAACTGAG TTATCACTTT
GACCCAGCTG CGAGTGATGA TGGCGTCTCT GTGCATATTC CTGTGGCACT ACTTAATCAA
ATCGATGATA CCGATTTCGA TTGGCTAGTG GCGGGGATGC GTGAGGAGAA ATGCGTTGCC
CTGATTAAGT CGTTGCCTAA GGGGCTGAGA CGTAACTTTG TGCCTGCGCC CGATTATGCC
CGTGCCTGCG TGCAGGCGAT GCAGCCCTTT AGCGCCAGTT TACTCGACGC CATGTGCAAA
CAGCTGCTGC GTATGAGTGG CACGCGCGTC AATCCCGAAG ATTTTGATGT TTCGCAGATG
CCAGTGCATT TGCAGATGAA TTTTAAGATT GAGGACGATA AGGGCAAGTT AGTCGCACAG
GGGCGGGTGC TTGATAGCCT CAAAGCGGAA TTGCAGGGCG TGGTCGCGAA GGCGATTCGT
CAGGTGGCGA ATAAGGGCAT CGAGAAAGAA GCGCTCACCG AATGGTCCTT TGGCGACTTA
CCTAAGCAAT TTGAGCAGCG TAAAGGTAAC TATCAAGTGC GGGCATTCCC CGCATTGATT
GACAACAAAG ACTCAGTTGC CATCAAATTA TTTGATGATG AATTTGAGGC TGAGGCGGCG
CACCGTCAAG GGCTTAGACG CTTGTTGTTA CTCAACATTC CTTCACCAGT AAAACACCTG
CAACAGGCTC TGCCCAACAA GGCCAAACTG GCGATGTATT TCAATCCCTT TGGTCAAGTG
CAAATTCTGA TTGATGACAT CATCGCCGCG GCGGTGCAGC AGTTGCTTGA TGAAAAGGCG
TTAGATGTAC GCGATGCAGC GCAGTTTGAT GCGGCAAAGG ATTGGGTGCG CCAAGAGTTG
AATCCAACAG CCGAGCAAAT CGCCCTAAAA GTGGAGCAGA TTTTGACGCT TTACCAAGGC
ATTAAAAAGC GTACTAAGGG CAAAATCAGT TTGGATATTG CTTTTGCGAT GAGTGATATT
CAAAGCCAAT TGGACCAATT AGTCTTTAAG GGGTTTGTTG AAGCTTGCGG TTGGAAGCGT
TTGGCCGATG TGGCGCGTTA CTTAAAGGCG ATTGAAACCC GCATTGATAA ATTACCTGTA
GATCCGACCC GTGACCGCTT GCATATGCAG AGTATCACTA AGGTGCAGGA CGCCTTAGCG
GCTCAACTTG CTAAGGTGCC ACGCTCGCAG CCTACACCAG CGGCACTGAT AGAAGCGCGG
TGGATGATTG AAGAATACCG AGTATCTTGC TTTGCCCAGG CGCTTGGCAC AGCGTATCCC
ATCTCAGAAA AACGCATTTT AAATCATATC CTGCTGAGCT GA
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| Protein sequence | MVLNSDKHPL SSAFLQQCFQ SDASRIRRRL FKLHKEADSD KKTQELAKLA EQAQAAFEKV
EQRLKARPRI NYPDNLPVSG MREDIAKAIS ANQVVIIAGE TGSGKTTQLP KICLELGLGS
RGFIGHTQPR RLAARSVASR VAEELQSPLG EVVGFKVRFA DALKSESYIK LMTDGILLAE
LTSDRYLDQY DTIIIDEAHE RSLNIDFILG YLKQILKKRP DLKIIITSAT IDVERFSKHF
NNAPIIEVSG RTYPVETRYR PLVQDTEADL DQIEGIFAAV DELVAEGLGD ILIFMNGERE
IRDTAEQLNR RNYRDTEILP LYARLSYGEQ SKVFSSHTGR RIVLATNVAE TSLTVPGIRY
VIDPGTARIS RYSYRTKVQR LPIEPISQAS ANQRQGRCGR VGPGICIRLY DEADFNNRPA
FTDPEILRTN LASVILQMLA IGLGDIAAFP FIEPPDPRHI RDGFLLLEEL QAVKQQKGNI
VLTPLGRQLS QIPVDPRLAR MVIESHQLGC LNEVLVIASG LSIQDPRERP MDKKQASDEA
HRRFADPQSD FVSWVNLWQH LKEQQKELSA SQFRKKCRDE YLAYLRVREW QDLYTQLKQA
VHDLKWRLND TPANYDALHR ALLSGLLSHI GFKDNNNEYL GARNRKFFVF PGSPLAKKGP
KWIMAAELME TSKLFARCCA KIEPEWLEPL AAHLIKKNHL EPHFEAKQGS VIAFENQVLY
GLTVVHRRRV QYGPINPVEA REIFIRSALA EGQLQTKEAF FIANQKLLED VEALEHKSRR
RDILVDEQVL MDFYEPRIPE GIYNAPKFFS WWKEARCTQP DLLDFNKSLL MQRSADHISA
LDFPDTWHKG NIRLQLSYHF DPAASDDGVS VHIPVALLNQ IDDTDFDWLV AGMREEKCVA
LIKSLPKGLR RNFVPAPDYA RACVQAMQPF SASLLDAMCK QLLRMSGTRV NPEDFDVSQM
PVHLQMNFKI EDDKGKLVAQ GRVLDSLKAE LQGVVAKAIR QVANKGIEKE ALTEWSFGDL
PKQFEQRKGN YQVRAFPALI DNKDSVAIKL FDDEFEAEAA HRQGLRRLLL LNIPSPVKHL
QQALPNKAKL AMYFNPFGQV QILIDDIIAA AVQQLLDEKA LDVRDAAQFD AAKDWVRQEL
NPTAEQIALK VEQILTLYQG IKKRTKGKIS LDIAFAMSDI QSQLDQLVFK GFVEACGWKR
LADVARYLKA IETRIDKLPV DPTRDRLHMQ SITKVQDALA AQLAKVPRSQ PTPAALIEAR
WMIEEYRVSC FAQALGTAYP ISEKRILNHI LLS
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