| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_2216 |
|---|
| Symbol | |
|---|
| ID | 1169953 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 2329348 |
|---|
| End bp | 2331606 |
|---|
| Gene Length | 2259 bp |
|---|
| Protein Length | 752 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637344071 |
|---|
| Product | sensory box protein |
|---|
| Protein accession | NP_717813 |
|---|
| Protein GI | 24373770 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACGAAG GAATGCAGAT TGTGGGTGCT GTTAGTGGTT TAAGCACTCC GTTTAATCAA
AACGTTAGCC TCGAATGCTA TAACGGTATT CTTTCGATGC TGCTAAATGG CGCTCCGTTA
GCAGATATTC TCCATGCTTT AGTGTTAAAA ATTGAAGATC AACGCCTTGG CACCCATGCT
TCTGTCTTGC TGCTCAGTGA GGATGGTAAA AGAGTGCTAA CGGGAGCCGC TCCCCATTTA
CCCGATAGTT ACAATCAAGT TATCCATGGG GTCGAAATTG GTCCTGAGGT CGGTTCTTGT
GGTACCGCGG CCTATACGGG ACAGCGGGTG ATTGTTGAGG ATATTGAACA TCATCCTTAT
TGGGCCTTGT ATAAATCTTT TGCGCTTGTC CACGGATTGA GGGCATGTTG GTCTGAACCT
ATCAAAGATA CTCAAGGCAA GGTACTTGGC ACCTTTGCTA TGTATTACAA AGAGATTAAA
TCCCCAACAG TTGCGGATTT AACCTTAATT GCTGAGGCGG CAAGACTGGC GAGTTTAGCC
ATAGAACGTA GCCGTTCATT GGAGTTTCAG CGTCTTGCGG TGAAAATATT TGATCGCTTA
CCGCTTGCGC TGGTGATTAC CAATGCCAGC CATTCTGTAC TCTATGCCAA TGATGCGTTT
AAGCTGATGG TTTGCCTACA ACCTGATGAT ATTTTGGCAT TTAATCCTGA GCAGTTTTTT
TCGCCCTCAG AGCCACATGA AATTGCCTCC TTATTTAATC ACCTCTCAGA GGGGAAAATG
TGGCAAGGTG AATTGGTTGG CCTGCGTAAT AATGGCGAGA CTTTTTATCT TGATTTAACC
GTAACGGTTT TCCGTGAATC CCACAGCGCA GATCTCGGTT TTGCTTGGTT ATTTTCCGAT
GTCAGTGAGC GTAAAAAAGC GGCGCAGTTA ATCAAATATC AAGCGAATAA TGATTCCTTA
ACGGGGCTTG CTAACCGCAA CGCCCTGTTT AGGCAAATCC AAGAGCTTAT AAATGCCGAT
AGCTTAACGC CGGGTTTTAG CTTTATGTTG ATGGACTTGG ATAACTTTAA ACAGGTTAAC
GATACCTACG GCCACGATAA AGGCGATGTC CTCTTAGTGC AGATGGTGGA ACAGGTTAAA
ATTTGTTTGG ACCCGCAGGC GGTGTTTGCG CGCTTAGGTG GTGATGAGTT TGCCATCTTA
TTGCCAGGGG TTGTGACTCA AAGAGAACTG TCGCAGCTGG CGGATAAGAT CAATAAACAG
GTTTATCGAC GTTACGAATT ATCCCACGAT AAAGGCGTTT ATAGTTCAGT GAGTATTGGT
ATTGCACGTT TCCCTGAAGA TGCCCTCGAT TTAGAGCAAC TGTTAAACTG CGCCGACCAA
GCGATGTATA TCTCTAAGGC CAATGGTCGT AATCGGTATC ATTTTTTTAC CGAGCAAATG
CAACAAAATG CCGAACGTAT TGCCAATCTT CACACGCTAC TTAAGCAAGC CTTAGAACAA
AACGCCTTCG AACTGTATTT TCAACCGATA GTCGATGCCA CAACGGGGCT TATTGTCCGC
GCCGAAGTGC TATTACGCTG GCAGCATGAA GGGCAGTTTA TTTCCCCCGA TGAATTTATC
CCCATTGCCG AAAACAGTGG CTTAATCGTT AGCATTGGTC GCTGTGTACG ACAAGCCGTA
ATGCAAACCA TTGTTGAAAT GCAAGCGCTG GGTTGGCCGA TGAGTTTAGC AATTAACGTG
TCGACCTTTG AATTTTGGTC CCATGAGTTG CAGGATGAGT TTTGTGACTC CTTTACCGAT
ATTATTGAAG GCTTAGGGGT AGAGGATTTT CCCTATGAAT TGATCACCTT GGAGATCACT
GAATCCCTGT TAATGAAAAA ACATGCTCAT TTAATTCAAG TGCTTAATGA GTTACGTGCC
AGAGGTATTA AAATCTCCCT TGATGATTTT GGTACAGGTT ATTCTTCGCT GTCTTACTTA
GCGAATTTTC CCATCGATCA AATTAAGATC GACAAGAGTT TTATCGATAG GCTCGCGGAA
GGTGAGCGGC ATCTTGCCTT GATTGAAGCG ATAGTGCGCT TAAGTCATGC ACTTAACTTA
CGCGTGACGG CGGAAGGCGT TGAAACTCAA GAGCAACTTC AGGTGATGAT GGATAACCAT
ATTCAAGAAA TTCAAGGCTA TCTATTTTAT AAACCCATAC CCAAGGCGGT GTTTTTTGAA
TTACTGGCTA AACAAGCGGT AATTTCGCCA CATTCATAA
|
|---|
| Protein sequence | MDEGMQIVGA VSGLSTPFNQ NVSLECYNGI LSMLLNGAPL ADILHALVLK IEDQRLGTHA
SVLLLSEDGK RVLTGAAPHL PDSYNQVIHG VEIGPEVGSC GTAAYTGQRV IVEDIEHHPY
WALYKSFALV HGLRACWSEP IKDTQGKVLG TFAMYYKEIK SPTVADLTLI AEAARLASLA
IERSRSLEFQ RLAVKIFDRL PLALVITNAS HSVLYANDAF KLMVCLQPDD ILAFNPEQFF
SPSEPHEIAS LFNHLSEGKM WQGELVGLRN NGETFYLDLT VTVFRESHSA DLGFAWLFSD
VSERKKAAQL IKYQANNDSL TGLANRNALF RQIQELINAD SLTPGFSFML MDLDNFKQVN
DTYGHDKGDV LLVQMVEQVK ICLDPQAVFA RLGGDEFAIL LPGVVTQREL SQLADKINKQ
VYRRYELSHD KGVYSSVSIG IARFPEDALD LEQLLNCADQ AMYISKANGR NRYHFFTEQM
QQNAERIANL HTLLKQALEQ NAFELYFQPI VDATTGLIVR AEVLLRWQHE GQFISPDEFI
PIAENSGLIV SIGRCVRQAV MQTIVEMQAL GWPMSLAINV STFEFWSHEL QDEFCDSFTD
IIEGLGVEDF PYELITLEIT ESLLMKKHAH LIQVLNELRA RGIKISLDDF GTGYSSLSYL
ANFPIDQIKI DKSFIDRLAE GERHLALIEA IVRLSHALNL RVTAEGVETQ EQLQVMMDNH
IQEIQGYLFY KPIPKAVFFE LLAKQAVISP HS
|
|---|
| |