| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_2191 |
|---|
| Symbol | metC |
|---|
| ID | 1169928 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 2302113 |
|---|
| End bp | 2303312 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637344047 |
|---|
| Product | cystathionine beta-lyase |
|---|
| Protein accession | NP_717789 |
|---|
| Protein GI | 24373746 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
|---|
| TIGRFAM ID | [TIGR01324] cystathionine beta-lyase, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGATA AACATCAGCT CGCCACCCAA ATCGTCAGCG TCGGTCGCGA TAAAAAATGG
ACCAAGGGCG TGATTAATCC GCCCGTATTT CGCGCATCGA CCATAGTGTT CGACACGATG
GAGGATATGC GTCATGCCGC CAAAAACAAA ACCAATGGCG AAATGTTTTA CGGCCGCCGC
GGCACCCCGA CCCACTTTGC GTTTCAAGCG GCGGTAAGCG AACTCGAAGG TGGCGCTGGC
ACAGCACTGT ATCCCTCTGG CGCGGCAGCG ATTAGCGCGG CTTTGTTATC GTTTTTACAG
GCGGGCGATC ATCTGCTGAT GGTCGATAGC GTTTACGAGC CAACACGCGA TTTTTGCAGC
CATATTCTGG CAGGCTTTAA TATTGAGACC ACCTATTACG ATCCCCTGAT TGGTGAAGGC
ATTCGCGCGC TTATCCGCCC CAATACTAAG GTATTGTTTT TAGAGTCTCC CGGCTCCATC
ACCATGGAAG TGCAAGACGT CCCAACCCTA TGCCGCATCG CCCATGAACA TGGATTGGTG
ACCATTCTCG ACAACACATG GGCCTCGCCA ATCAATAGCA AGCCCTTCGA GATGGGTGTC
GATGTGTCGA TTCAAGCCGC CACAAAGTAT ATTGTCGGCC ACTCGGATGT GATGATAGGC
ACGGCGACCG CCAACGAGCA ATACTGGCCG CAGCTGCGTG AGCGCAGTTA TTTACTGGGG
CAAACCACTT CCCCCGATGA TGTGTATCTC GCCACGCGCG GATTACGCAC CTTAGGCGTG
CGCATGGCGC AACATGAGAA AAATGCCCTA AAAGTAGCTA ACTGGTTACA AACCCGTCCT
GAAGTAGACC ATTTACGTCA TCCCGCCTTT GAGACCTGCC CAGGACATGA ATTCTTTAAA
CGCGACTTTA GCGCATCAAA TGGTTTGTTT TCCTTTGTAT TAAAACAAGG CGATCAGGAA
GCGGTTACCG CACTCGTTGA AAATATGCAG CACTTTAAAA TGGGCTTTTC TTGGGGTGGT
TATGAGAGTC TGATCTTAGG GATTTTTGGC ATTGAAAGAA TCCGTAGTGC GACCAAGTGG
GATGCTAGCA AACCGTTGAT CCGTGTTCAT ATTGGTCTTG AAGATCCCGA GGATTTAATT
GCCGATCTCA GCGCAGGATT CGAGCGTTTT AATGCCGTGC TCGCCGCTAA GGTCAAATAA
|
|---|
| Protein sequence | MTDKHQLATQ IVSVGRDKKW TKGVINPPVF RASTIVFDTM EDMRHAAKNK TNGEMFYGRR
GTPTHFAFQA AVSELEGGAG TALYPSGAAA ISAALLSFLQ AGDHLLMVDS VYEPTRDFCS
HILAGFNIET TYYDPLIGEG IRALIRPNTK VLFLESPGSI TMEVQDVPTL CRIAHEHGLV
TILDNTWASP INSKPFEMGV DVSIQAATKY IVGHSDVMIG TATANEQYWP QLRERSYLLG
QTTSPDDVYL ATRGLRTLGV RMAQHEKNAL KVANWLQTRP EVDHLRHPAF ETCPGHEFFK
RDFSASNGLF SFVLKQGDQE AVTALVENMQ HFKMGFSWGG YESLILGIFG IERIRSATKW
DASKPLIRVH IGLEDPEDLI ADLSAGFERF NAVLAAKVK
|
|---|
| |