Gene SO_2125 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_2125 
SymbolcheD-1 
ID1169868 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp2230846 
End bp2231472 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content41% 
IMG OID637343990 
Productchemoreceptor glutamine deamidase CheD 
Protein accessionNP_717728 
Protein GI24373685 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG1871] Chemotaxis protein; stimulates methylation of MCP proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTAGTGG TAAAACCAAG TCTTGAGTTT GCGCTTAATG AGCCAAATCG GTATTACGAT 
CGTCACTTTG AGCGCTCCGC GGTTAAAATT TTACCAGGCG AGTATTTTGC TACTCGTGAA 
AATACTATGA TAGTCACAGT GTTAGGTTCT TGTGTGGCGG TATGCCTCTA TGATCCCGTC 
TTGAAAATTG GTGGAATGAA TCATTTTTTA TTGCCTAATG ATAATGTTAC TGCACCCAAT 
ATGATGACCG AGTCAGCGCG TTATGGGGTG TTTGCAATGG AATTACTGAT TAACCACGTT 
CTCAAATTGG GGGCGCGTAG GAATGCTTTA GAGGCAAAAG TATTCGGTGG CGGAAATGTA 
TTAAGGGGGT TAACTGTTCA GAACATTGGA GAACGTAATG CTGAGTTTGT ACTGGATTAT 
TTACAGATGG AGCAAATACC AGTGATCGCT GCGGACTTAC TCGATATATA TCCACGAAAA 
GTATATTTTT TTCCTGAAAC GGGATTAGTG AAAGTAAGGA AAATCAAGAC TATACATAAT 
AGCACCATCA TGGATAGAGA AAGTGAGTAC CGCTTACGGA TCAAAAATCT CCCAAGCGGT 
GGAGATGTAG AACTTTTTGG TGAATAG
 
Protein sequence
MLVVKPSLEF ALNEPNRYYD RHFERSAVKI LPGEYFATRE NTMIVTVLGS CVAVCLYDPV 
LKIGGMNHFL LPNDNVTAPN MMTESARYGV FAMELLINHV LKLGARRNAL EAKVFGGGNV 
LRGLTVQNIG ERNAEFVLDY LQMEQIPVIA ADLLDIYPRK VYFFPETGLV KVRKIKTIHN 
STIMDRESEY RLRIKNLPSG GDVELFGE