| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_2113 |
|---|
| Symbol | |
|---|
| ID | 1169856 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 2211703 |
|---|
| End bp | 2215860 |
|---|
| Gene Length | 4158 bp |
|---|
| Protein Length | 1385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637343978 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_717716 |
|---|
| Protein GI | 24373673 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2911] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAGC CCCCTATTCT TGAGCAAAAT AGTCTTGAAC AACCCCATCC AGAGCAACTG
CAATCAAGGA CTTCAGACAC CCCTTGCGCC GAACCTTGCC AAGCTGCTGC ACCGCCAAAA
ACCTTTACCC AACGTCTATG GCAAATATTT AAACTCTGCA CACGGATTAT TGTTTACGTT
CCCTTAAGCC TCTTGGTCTT GATGGCATTA CTGCTAGGGA CTGAGATTGG CTCGCGAATA
AGTGTTGAGT TAGCAGATAA ATTTGTGCCT GATCTCGCAT TAACCTACAC CTCAGGCACT
TTAAATAAAG ATCTCACCTT AGCCCACGTC AGTTGGTCAA TGGCGGGGAT CCAAGTAGAG
TTAGAGGATC TGCACTTAGC TTGGCAGCCC ACTTGTTTAT TGCAAAAACA GTTATGTGTT
AATGCCTTAA ATGCCAGTAA AGTGGATGTC AGCATAGAGA CTGATGCCCT AAGCACAGAC
AATAACACAA ATGACACTGA AGTTGTCTCC GATGATACGG ATGAACCAAC CGAGCTAGTA
TTACCTTTTG GAATCACACT CGATGTGGCG GATTTGAATC ACATCAATGT CCGCGTCGAT
AACATGCGCT TTTCAGCCAA TCATATTACA ACCTCAGCCA CCTGGTTTGC GAAAGGACTT
ACGGTTGAAC AACTTTCTAG TGAAGGCTTA GCGATATTAA TCCCAACGGG TGATGAAACC
ACTACCGCAA TAACCGGCCC AACACAGGTC ACTCAGAAGA CAGCAACAAC GGAATCTGAA
ACGGTTAAGC CTGCTACAGA AGCGGTAAAA GAAAATACAA CAAACGCGAC TGACAAACCG
GCAGAAGATA AGTCCCTCGC CTCAGCAAAA CCAGCACCTT CAACACCCTC TCAAAGCAAC
ACATCAGCGC CAACTGATAA GCTCGCTGAT GAATGGGCCC TAGCGCATTT ACCTCAAGTG
TTTATGCCCT TTCCGGTCAA TGTTAAAAGT CTTACTTTAG ATAACAGCAA TTTACAAATT
GGCGCACGCG AAGATGTGTT TAGCCATATT GAATTACAAG GGCAATTTGA GCAGTATCAA
CTGACCTTAG ATAAACTGAT ACTCACCCAC AGCTACGGTG AGCTTTCGGT GATGGGCAAA
CTTGCCCTCG AGCAGGATTA TCCCCTTGCA CTCGATATCG AGGCTAACTT GACACAAGTC
GCTGAGTTAC CAGAGCTCAT CCATCAACAA CTCAAACTTA AACTAACGGA CAGCGTAGGA
CAGCTCAGCC TCCACGCTTT AGCACAAGGG GATGCCGATT TTAGCCTCGA GGGACAAATC
ACCCTCAAGG ATCCAGCCCT TACCTATAAG GCAACATTAG AGAAAGCCCG TTTACAATGG
CCACTTAACA ACCCAGAATA TATCGTCAGT GATTTAACCC TCAATAGCCA AGGCTCACTC
AATAAACAAG CCGCAACGAT TGATGCTAAT GTCATTTCGC CTTTCCATAA AATCTTAGCC
ATCCGCAGTG AGCTACACCA CCAAGATACC AAGCTTTCGA TAAAGCAATT TAGCGCTAAA
GGAGAATTAG GTGCGGTAGA TGTCGAAGGT GAGCTAGATT ACGCCAACGC AATGACTTGG
AAAGCCAAGG TATTACTCGA TAAGCTGAAA TTACAGGAAA TCACCTTACC AGAAACCGCG
CAGACCAAAG AGCCTGCCCC GAGTAAAGAC ACAAAAACAC CGCAAAATAA TGCTGCAGCG
CCTGCCACCA GTCTGCCCAA TAGCTTGATC TCTGGCCAAT TACAAACCTC GGGCCGCCTG
CAGGATAACG CGTGGCAAGT CAGCCTGACA GAGACGCAAT TATCTGGCAC GATGCAGGGA
TATCCATTTG ATATTACTGC CGATGTCAGC ATAAACGATA AACTCTATGT TAGTGCAAAA
GGGGTTAATG CCCAAGTTCT AGGCTCTACC TTAACCTTAG CGGGTGAAAC CAATAAAAAT
TGGAACCTAG CGGGCAAACT GCTCGTGCCC GATTTCGGTC TATGGTTGCC CCAAGCCAGT
GGTCAACTGC AGGCCGATAT CAATGTGACT GGAGATGAAA AACATCCCCA GCTTGAGTTA
ACCGCCCAAC TGGTCGATCT GGCACATCAC AATATTAAAC TCAGGGAATC AACCCTAAAA
GCCTACTATA AGCCTTTGGA TCTGCATGAG TTTGCCATAT CTCTTAAATC AAAAGCATTA
CAACTTGGCT CAAAGAGTTT AGATACCGTC ACCTTTGGCA GTAAGGGCGA TATCCAAAAC
CAAAAACTTA CCTTAAGTGC CACTGGGGAT TTAGGGCTCG AGCTTGGCGT GACCAGCCAA
TACGATATGA AAAAATCCCA ACTACTGGCA CAAGTGAACA AGATTAACTT AGCCACACCT
GTCGGCCGCT GGGAGATAGA TAAAGATATC CTTATCGCTT GGGATAAAAA TAACACCAAG
GGCAATATTA GCCCCTTCTG TCTAGTTAAT CCTAACAGTA AGATTTGCTT AGATAATCAA
GTATCCCTCG GCAAAAAAGG CGATGCGCAA CTCAGTTACA CGGGCAATCT TGGTAAGCTC
TTAGTCCCTG TATTGCCAAG CAATATGAGC TGGGATGGCA GTTCCTCACT GCTAGCGAAC
TTTGCCTGGG CCGCAGGACG TAAACCCACC GCGAATGTCG ATTTTAATTT TGCGCCAGGT
AGTATTAAAC TCAAACGCGC TAAAAATCGT GAAGTCACTA TCAAATATCA GCAACTTGCT
TTAAAGGCTA ACTTAGATGG CAAACGCCTA CTGTCGTCAA TCAGCTTTGA CTCTGAGGAT
GTGGCAAGCT GGCAAAGTGA AATCACCGTG AATGTGACGC CCGACCGTAC CCTGTCGGGT
TATGCCAATA TCAAACAAAT AAACCTGCAA CCACTGGGCG AATTTTTCCC ACAACTCAAC
ACCCTCGAAG GTTTGCTGAC CAGCAAATTA AACTTTGCCG GCACCCTTGA TGCGCCAGAG
GTCTCAGGAA ATGTTTCGCT CACTCAAGGC GCACTCGCGC TAACAGCAAA CCCGACTCTT
ATCAATAAAA TTGATATGTC GATGGATCTT GGTGGCCAAC AAGCCTCACT TAAAGGCCGC
TGGATGATGG GCAACGGTTT AGGTCGAATC ATCGGAGAAA TGCGTTGGCC CCAAGGGCAA
TTTAGCGGAG AACTCGCCGT CAAAGGCGAT AAACTGGCCG TGATCCAACC GCCACTCGCA
CTGCTTGATA TATCTCCGGA TCTAACCATT GCCTTTAGCA GCCGACAACT CGAGGTCAAA
GGCGTGGTCG ATGTGCCCTC AGGCAGTATC AAAATTGTAC AACTGGCCGA GGGAGGTGTT
GCACTGTCAG AAGATGTGGT GTTCGATGAC TCGATTGCCG CGACACAACC CAAAGCCAGC
CCCTATGCGA TTGTGGCAGA TCTTAACATC AACGTAGGAA ACGACTTAAA AGTGGATGGA
ATGGGCCTCA AAGGTAAGCT TCAAGGCACC TTAAAACTCC AGCAACAGGC ATTTCGTCCA
CCATTACTGT TTGGCGATAT CAAGGTCAAA CAAGGCAGTT ATAAGTTTAT GGGGCAAACC
CTGAAGATCC GCGCGGGTGA AGTACAATTT GTTGGGCCTA TTTCGGTTCC TAACTTAAAT
ATTGAAGCGA TTAGGGAAAT TAAAAGTGAA GATCTTATCG CCGGTGTGCG AGTGACGGGG
ACCCCCGCTC GCCCAGTGGT AACCCTCTTC TCTAATCCGG CCAAGGAACA AGCGGAGATC
TTGTCCTACA TTATTAAAGG TAGCGGTTTT AATAGCAGTA ACAACGAGCA GAACAATTCA
TTAATGATGG GAGCAGCACT CGGACTCAGT TCCCAAGTTG GTGGAGGCGG CGCTATCAAT
AACATCGGCA ACACGGCAAC GGGGATTATT GAAGAGTTCG GTTTCTCTAA CGTACAACTC
GACACTAACG ATGAAGGCCG CGTGGCGATC AGTGGTTTTA TCGGTGATAA GCTGATGGTC
AAATACGGTG TGGGTGTGTT CAACCCAGGC TATGAGATGA CAGTCCGGTA TTACCTATTA
TCCCAACTCT ATCTTGAAAC GGTGTCCGGA ACCTTAGGCC AATCCCTCGA TATTTATTAC
AACTTTAATA TCAAGTAA
|
|---|
| Protein sequence | MSQPPILEQN SLEQPHPEQL QSRTSDTPCA EPCQAAAPPK TFTQRLWQIF KLCTRIIVYV
PLSLLVLMAL LLGTEIGSRI SVELADKFVP DLALTYTSGT LNKDLTLAHV SWSMAGIQVE
LEDLHLAWQP TCLLQKQLCV NALNASKVDV SIETDALSTD NNTNDTEVVS DDTDEPTELV
LPFGITLDVA DLNHINVRVD NMRFSANHIT TSATWFAKGL TVEQLSSEGL AILIPTGDET
TTAITGPTQV TQKTATTESE TVKPATEAVK ENTTNATDKP AEDKSLASAK PAPSTPSQSN
TSAPTDKLAD EWALAHLPQV FMPFPVNVKS LTLDNSNLQI GAREDVFSHI ELQGQFEQYQ
LTLDKLILTH SYGELSVMGK LALEQDYPLA LDIEANLTQV AELPELIHQQ LKLKLTDSVG
QLSLHALAQG DADFSLEGQI TLKDPALTYK ATLEKARLQW PLNNPEYIVS DLTLNSQGSL
NKQAATIDAN VISPFHKILA IRSELHHQDT KLSIKQFSAK GELGAVDVEG ELDYANAMTW
KAKVLLDKLK LQEITLPETA QTKEPAPSKD TKTPQNNAAA PATSLPNSLI SGQLQTSGRL
QDNAWQVSLT ETQLSGTMQG YPFDITADVS INDKLYVSAK GVNAQVLGST LTLAGETNKN
WNLAGKLLVP DFGLWLPQAS GQLQADINVT GDEKHPQLEL TAQLVDLAHH NIKLRESTLK
AYYKPLDLHE FAISLKSKAL QLGSKSLDTV TFGSKGDIQN QKLTLSATGD LGLELGVTSQ
YDMKKSQLLA QVNKINLATP VGRWEIDKDI LIAWDKNNTK GNISPFCLVN PNSKICLDNQ
VSLGKKGDAQ LSYTGNLGKL LVPVLPSNMS WDGSSSLLAN FAWAAGRKPT ANVDFNFAPG
SIKLKRAKNR EVTIKYQQLA LKANLDGKRL LSSISFDSED VASWQSEITV NVTPDRTLSG
YANIKQINLQ PLGEFFPQLN TLEGLLTSKL NFAGTLDAPE VSGNVSLTQG ALALTANPTL
INKIDMSMDL GGQQASLKGR WMMGNGLGRI IGEMRWPQGQ FSGELAVKGD KLAVIQPPLA
LLDISPDLTI AFSSRQLEVK GVVDVPSGSI KIVQLAEGGV ALSEDVVFDD SIAATQPKAS
PYAIVADLNI NVGNDLKVDG MGLKGKLQGT LKLQQQAFRP PLLFGDIKVK QGSYKFMGQT
LKIRAGEVQF VGPISVPNLN IEAIREIKSE DLIAGVRVTG TPARPVVTLF SNPAKEQAEI
LSYIIKGSGF NSSNNEQNNS LMMGAALGLS SQVGGGGAIN NIGNTATGII EEFGFSNVQL
DTNDEGRVAI SGFIGDKLMV KYGVGVFNPG YEMTVRYYLL SQLYLETVSG TLGQSLDIYY
NFNIK
|
|---|
| |