Gene SO_2104 details

Gene Information

• Locus tag: SO_2104
• ID: 1169848
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 2201569
• End bp: 2202228
• Gene Length: 660 bp
• Protein Length: 219 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637343970
• Product: DNA-binding response regulator YgiX, putative
• Protein accession: NP_717707
• Protein GI: 24373664
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGCATCA TGTTAGTGGA AGATAATGAG TTACTGGCGC AAGGAATTTG CCTAAGCCTT 
GCTAAAATGG GCATGCAGGT GGATCACTTA AGTAGTTATC ATCAGGCGTT GGTGGGGATA 
AAAAATGAAA CTTTTAGCGC CATTGTGCTC GATTTAGGTC TTCCCGACGG AAATGGTAAA 
GACCTCCTCA AAGCATGGCG CTCGCAGGGT GTGTCTATTC CCACCATAGT GCTGACCGCG 
AATACCGATT TTGATACCAA ATTGGAGTGC CTCGATGTTG GCGCCGATGA TTATTTAGGC 
AAACCCTTCG ATGTGCGTGA ATTAGCCGCG CGTATTAGAG CAATCGTGCG CCGTCAATTC 
GGTCTTGACC ATAACAGCTT AAATATTGGC GCATTAAGTA TCGATCTCAA CACTCGAGAA 
GTGACTTTTC GTGATCAAAA TGTGTCCCTC TCGCGACGGG AGTTTCAGCT ATTACTGGAA 
CTTGCTCAGT CCGCAGGCCG AGTGTTAACC CGTAATCAGT TAGAGCAACT CACCTATGGC 
TGGGATGAGG TGGGTAGTAA TTCAATCGAA GTCCATATTC ATCATTTACG TAAGAAATTA 
GCCAATGAGT TGATTAAGAC GGTTCGCGGG ATTGGTTATA CTCTCACGGA AGTGAATTAG 

 

Protein sequence

MRIMLVEDNE LLAQGICLSL AKMGMQVDHL SSYHQALVGI KNETFSAIVL DLGLPDGNGK 
DLLKAWRSQG VSIPTIVLTA NTDFDTKLEC LDVGADDYLG KPFDVRELAA RIRAIVRRQF 
GLDHNSLNIG ALSIDLNTRE VTFRDQNVSL SRREFQLLLE LAQSAGRVLT RNQLEQLTYG 
WDEVGSNSIE VHIHHLRKKL ANELIKTVRG IGYTLTEVN