| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_2093 |
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| Symbol | hypB |
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| ID | 1169837 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 2188479 |
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| End bp | 2189273 |
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| Gene Length | 795 bp |
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| Protein Length | 264 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637343959 |
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| Product | hydrogenase accessory protein HypB |
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| Protein accession | NP_717696 |
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| Protein GI | 24373653 |
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| COG category | [K] Transcription
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0378] Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase |
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| TIGRFAM ID | [TIGR00073] hydrogenase accessory protein HypB |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTGTAAAG ACTGCGGCTG CTCTCTACCT CGCCACTCTG CGATTCAACA AGAGCATGAT
CACCATACAG GTCATTCCCA CGATCACAGC CACATACATC AGCAATTGCA TACCAATCCT
CAGCTTAACG ATAAAAAAAC CTTGTCGGTG ATCCACAAAA TTCTCGATAA AAATGATGTA
GAAGCAGCCC ACAACCGCGC CCATTTCGAG GCTCACCATA TTACCGCCTT CAACCTCATG
AGTAGTCCTG GCAGCGGCAA AACCACTCTG CTTGAGCACT TAAAAGAATA CACAAAGCTT
AATTACGCTG TGATTGAAGG TGATCTTGAA ACCTCCCGTG ATGCAGACCG TTTAATCGCC
AAGGGCATTA AAGCCCATCA AATTCAAACG GGCAGCGCCT GCCACCTTGA CGCCTTTATG
GTGCATGGCG CTTTACATCA TCTGCCGCTG GAAGGCGTAG ATATCTGCTT TGTGGAAAAT
GTGGGGAACT TAGTCTGCCC CGCCAGTTAT GATGTAGGCA CCCATAAAAA TATCGTGCTG
CTCTCCGTTC CCGAAGGTGA TGATAAAATT GAAAAATATC CGGTAATGTT CCGCCGCGCC
GACCTCGTTC TGATCACAAA ATGTGACCTA TTACCCTACT TCGATTTCAG TGTCGACGAG
GCCAAAACCC AGCTTAAAAA ACTCAACCCT AACACTCAAA TACTCGAAGT CTCCATTAAA
GATGGCGATT CTATGCACGC CGTCGCTGCA TGGCTTAACA GCAACCTACG CCCAGCCTCT
GGAGAGCCAC AATAA
|
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| Protein sequence | MCKDCGCSLP RHSAIQQEHD HHTGHSHDHS HIHQQLHTNP QLNDKKTLSV IHKILDKNDV
EAAHNRAHFE AHHITAFNLM SSPGSGKTTL LEHLKEYTKL NYAVIEGDLE TSRDADRLIA
KGIKAHQIQT GSACHLDAFM VHGALHHLPL EGVDICFVEN VGNLVCPASY DVGTHKNIVL
LSVPEGDDKI EKYPVMFRRA DLVLITKCDL LPYFDFSVDE AKTQLKKLNP NTQILEVSIK
DGDSMHAVAA WLNSNLRPAS GEPQ
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