| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_2091 |
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| Symbol | hypD |
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| ID | 1169835 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 2187032 |
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| End bp | 2188171 |
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| Gene Length | 1140 bp |
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| Protein Length | 379 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637343957 |
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| Product | hydrogenase expression/formation protein HypD |
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| Protein accession | NP_717694 |
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| Protein GI | 24373651 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0409] Hydrogenase maturation factor |
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| TIGRFAM ID | [TIGR00075] hydrogenase expression/formation protein HypD |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTGAAT TAAAACAACT TTATCAAGGC TTTCGCGATC CGCAAACCAT TGCCTCACTT
GCACAGGATA TTGCCAAGGT CGCCCGTACA CTCAAAGAGC CCATCAACAT TATGGAAGTC
TGCGGCGGCC ATACCCACAC CATCATGAAA TACGGCTTAC TGGATTTGCT GCCGGACAAT
ATTGAGTTTA TCCATGGCCC AGGCTGCCCA GTGTGCATTA TGCCTAAAGA GCGTATCGAC
CAAGCGGCAG TGCTTGCCCA GCAGGAAGAC GTGATTTTAG TGACCCTAGG GGATATGATC
CGCGTCCCTG GCTCTAAAGG TTCACTCGCC AGTTTCAGGG CCAAAGGCTG CGATATTCGG
CCTATCTATG ACCCTTTAGA CACGCTCAAA ATCGCCCGTG ATAATCCACA TAAAACGGTG
GTGTTTTTCG CCATCGGCTT TGAAACTTCA ACGCCAATGA CCGCCGTATT ATTGCAACTG
GCAGAACAAC AAAAGCTGGC GAATGTGTTT TTTCATATCA ACCATGTATT AGTCCCCCCC
GCAATTGATG CGGTGATGCA CGATCCCAAC GCCAGGGTCA ATGCCTTTAT CGGCCCCGCC
CACGTGAGTG TGATCAGTGG CGCCAAAATC TATCGCCCAG CTGTTGAGCA ATATGGCACA
CCAGTAGTGG TCTCCGGCTT TGAACCCGTG GATGTGATGG AATCGATTTT GCGGATCATG
CGGCAAAAAG CCGCGGGCAA GGCAGAACTC GATATCCAAT ACAGCCGCGC CGTGTCGGAG
CAAGGCAATC TTGCCGCACA AGCAAAAGTT GAGCAGTTTT TCCAGATCAG GCCGCAATTT
CGCTGGCGCG GCCTAGGGCC TATCCCAAAT TCAGCACTGC AACTCAAGCC CGAATATGCC
CATAGGGATG CCGAACTGCG TTTTAAAAAC TGTTTGCCCG TCAAAGAAAT CGATGATCAT
AAAGCCTGCC AATGCGGCGA TATTCTACGC GGTCTCGCTA AACCGAAGGA CTGTAAAGTA
TTTGGCCGCG GCTGCAATCC TGAAACCCCC CTCGGTAGCT GTATGGTCAG CTCCGAAGGC
GCTTGTAATG CTTATTACCG CTATCAAGGT ATCGATAGCA AGGAGCAACA TCATGGCTGA
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| Protein sequence | MLELKQLYQG FRDPQTIASL AQDIAKVART LKEPINIMEV CGGHTHTIMK YGLLDLLPDN
IEFIHGPGCP VCIMPKERID QAAVLAQQED VILVTLGDMI RVPGSKGSLA SFRAKGCDIR
PIYDPLDTLK IARDNPHKTV VFFAIGFETS TPMTAVLLQL AEQQKLANVF FHINHVLVPP
AIDAVMHDPN ARVNAFIGPA HVSVISGAKI YRPAVEQYGT PVVVSGFEPV DVMESILRIM
RQKAAGKAEL DIQYSRAVSE QGNLAAQAKV EQFFQIRPQF RWRGLGPIPN SALQLKPEYA
HRDAELRFKN CLPVKEIDDH KACQCGDILR GLAKPKDCKV FGRGCNPETP LGSCMVSSEG
ACNAYYRYQG IDSKEQHHG
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