| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_2001 |
|---|
| Symbol | ushA |
|---|
| ID | 1169754 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 2099989 |
|---|
| End bp | 2101698 |
|---|
| Gene Length | 1710 bp |
|---|
| Protein Length | 569 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637343877 |
|---|
| Product | bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor |
|---|
| Protein accession | NP_717608 |
|---|
| Protein GI | 24373565 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAATA TGCTTATTAA AGGACTCATT GCAACTGCAG TGCTGACTGC GTTAGCAGGT
TGTAATAGTG ATGATGATAA AGTTCCAACA ACTTGCGCCG AAGCTGGCGC TGCCTGTAAA
ACATTTACAA TCCTTCATAC CAATGATAAC CATGGCCGTT TTTGGGAAAA CAAAGATGGC
GAATATGGTT TAGCCGCCCA GAAAACCTTG GTTGATCAAA TTCGTGCCGA AGTGAGTAAG
AAAGGTGGTC AAACGCTGTT ACTTTCTGGT GGCGATATTA ACACTGGCGT GCCTGAATCC
GATTTACAAG ATGCGATTCC TGACTTTACT GGTATGAACA AAATTGGTTA TGACGCAATG
GCAGTCGGTA ACCATGAATT TGATAATCCA TTATCAGTTG TGGATATGCA ACGCAGCCTT
GCCGAATTCC CTATGTTAGC GGCCAACATT TATAAGGCTG ATGGCACTCG CTATTTCGAT
GCCTATAAAA TTTTCGATGT TAATGGTGTA AAAATAGCTG TTATCGGTTT AACCACTGAA
GATACCGCTA AGATCGGTAA CCCAGAATAT ATCAGTGAAT TAGAGTTTAG AGATCCAAAG
AAAGAAGTTG CCAACGTCAT CAAAGAAATC AAAGAGGCTA AGTCAGCGGA CATCATTTTT
GCAGTGACAC ACATGGGTCA CTACGCCGAT GGCCAAAATG GTAGCAATGC GCCTGGTGAT
GTGGCGTTAG CCCGTTCACT GAAGGAAGGC GATCTACAGG TGGTGATTGG CGGCCATTCA
CAAAACCCCG TCTGTATGGA GCCTGGCAAT AAGGCCTATG CAGCATTCAA ACCGGGCGAT
GCCTGCGCAC CAGATCAACA AAATGGTACT TGGATTATGC AAGCCCACGA ATGGGGTAAG
TATGTCGGTC GTGCGGACTT TGAATACTTC AATGGTGAAC TTCACTTAGC CAGCTACAAA
TTAGTGCCAG TGAACTTAGT TAAAGAAGTG ACTGATGAAG CGGGTAACAA GAAAAAAGTG
CTCGTCGGTG AAAAGATTGA GCCTGATACA GAGTTAAAAG AGCTGCTTTC TTACTATCAA
GAGAAAGGTC AAGCTAAGTT AGATGAAGTG ATTGCGACTA CCGATGCGCT GCTCGATGGT
GAGCGTGCAA ATGTGCGTAA CAAGCAGACC AACTTGGGTC GTATGTTAGC CATGGCACAA
AGTGGTAAAG TGTCTGCTGA TTTTGGGGTG ATGAACTCAG GTGGTGTGCG CGCTTCTATC
AAAGCGGGTA ACATTACTTA CCGTGACGTA CTTACCGTTC AACCTTTCGG CAATATGGTG
ACCTTAAACG AGATGACTGG TGCGGCCGCT GCTGATTATT TAGGTGCAGT GGGTAGTCTT
CAAATTGGTT CTGGTGGTTA TGCGCAAATT ACAGGCGTGA AGATGACCGT TGACTGTGTA
GCCAAAAAAG CGACAGTTCA TGAAATCAAT GGTAAAGCAT TTAGCGCAAC GGCAACCTAT
AAGTTCACCG TGCCTAGCTT TAACGCTGCT GGTGGTGACG GTTATCCCAA ATTGGTAAGC
CCAATCCAAA CAGGCTATGT TGACGCCGAT TTACTTTATA CTTTCCTGAA AGAGAAACAA
TCTATCGTTG CTGCTGATTA CAACCCAGTG GGTGACATTG TGTATGAAAA CTCAGATAGT
GTAGAAGGTT GTAAGATTAC AGCGAAGTAA
|
|---|
| Protein sequence | MTNMLIKGLI ATAVLTALAG CNSDDDKVPT TCAEAGAACK TFTILHTNDN HGRFWENKDG
EYGLAAQKTL VDQIRAEVSK KGGQTLLLSG GDINTGVPES DLQDAIPDFT GMNKIGYDAM
AVGNHEFDNP LSVVDMQRSL AEFPMLAANI YKADGTRYFD AYKIFDVNGV KIAVIGLTTE
DTAKIGNPEY ISELEFRDPK KEVANVIKEI KEAKSADIIF AVTHMGHYAD GQNGSNAPGD
VALARSLKEG DLQVVIGGHS QNPVCMEPGN KAYAAFKPGD ACAPDQQNGT WIMQAHEWGK
YVGRADFEYF NGELHLASYK LVPVNLVKEV TDEAGNKKKV LVGEKIEPDT ELKELLSYYQ
EKGQAKLDEV IATTDALLDG ERANVRNKQT NLGRMLAMAQ SGKVSADFGV MNSGGVRASI
KAGNITYRDV LTVQPFGNMV TLNEMTGAAA ADYLGAVGSL QIGSGGYAQI TGVKMTVDCV
AKKATVHEIN GKAFSATATY KFTVPSFNAA GGDGYPKLVS PIQTGYVDAD LLYTFLKEKQ
SIVAADYNPV GDIVYENSDS VEGCKITAK
|
|---|
| |