Gene SO_1954 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_1954 
Symbol 
ID1169714 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp2061045 
End bp2061668 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content47% 
IMG OID637343837 
Productamino acid transporter LysE 
Protein accessionNP_717561 
Protein GI24373518 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCAGATT TTGCCTTACT TGCAGTGTTT ATTCCGACCT TTTTCTTTGT TGCCATCACG 
CCCGGTATGT GTATGACACT CGCCATGACG CTCGGGATGA GTATCGGTGT ACGTCGAACC 
CTGTGGATGA TGCTCGGTGA GCTTATAGGA GTAGCCTTAG TCGCCACCGC TGCAGTGATG 
GGTGTTGCCA GTATTATGCT CAACTATCCA GAAGTGTTTC AGATCTTTAA ATGGGTCGGA 
GGCCTTTATT TAGGCTATAT CGGCGTTCAA ATGTGGCGTG CTCGAGGCAA AATGGCCATA 
TTAAGCGATG ATAAAACTAA CCCAAGAGTC AGTAATCTCA CCTTGATCTC ACAGGGATTT 
ATTACTGCAA TTGCTAACCC TAAGGGCTGG GCGTTTATGG TGTCGCTATT GCCCCCCTTT 
ATTAATGCAG AACGGGAAGT AGCACCACAA CTCCTTGCAC TCCTGAGCAT TATTATGGTG 
ACAGAGTTCA CCTCTATGCT GGCCTATGCC AGTGGCGGAA AGAGTTTGCG GATCTTTTTA 
AGTCGCGGTG ACAATATCCG CTGGCTAAAT CGAATTGCTG GCAGCCTGAT GATTGGCGTT 
GGGATCTGGT TAGCGATTAG TTAA
 
Protein sequence
MPDFALLAVF IPTFFFVAIT PGMCMTLAMT LGMSIGVRRT LWMMLGELIG VALVATAAVM 
GVASIMLNYP EVFQIFKWVG GLYLGYIGVQ MWRARGKMAI LSDDKTNPRV SNLTLISQGF 
ITAIANPKGW AFMVSLLPPF INAEREVAPQ LLALLSIIMV TEFTSMLAYA SGGKSLRIFL 
SRGDNIRWLN RIAGSLMIGV GIWLAIS