Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_1928 |
Symbol | sdhA |
ID | 1169690 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 2031615 |
End bp | 2033381 |
Gene Length | 1767 bp |
Protein Length | 588 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637343813 |
Product | succinate dehydrogenase flavoprotein subunit |
Protein accession | NP_717535 |
Protein GI | 24373492 |
COG category | [C] Energy production and conversion |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup [TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAGTATTC CAGTACGCGA ATTTGATGCT GTAGTGATCG GCGCCGGTGG TGCGGGTATG CGTGCAGCAC TACAGATTTC TAAAGAAGGT AAGAGCTGTG CGCTTTTATC TAAAGTTTTC CCAACTCGTT CTCATACTGT GTCTGCGCAG GGTGGTATCA CAGTTGCGCT GGGTAACGCC CATGAAGACC ATTGGGAACA ACACATGTAC GATACCGTAA AAGGTTCCGA CTTCATCGGT GACCAAGACG CTATCGAATT TATGTGTCAA ACCGGTCCAG AAGCCATTAT TGAACTTGAG CACATGGGTT TACCATTCTC TCGTTTCGAT AACGGTAAGA TTTACCAACG TCCCTTCGGT GGTCAATCTA AAAACTTTGG TGGTGAACAA GCGGCACGTA CCGCAGCAGC GGCCGACCGT ACAGGTCACG CACTGCTTCA CTGCTTATAC CAACAGAACG TCAAACACAA AACACAAGTG TTTTCTGAGT GGTATGCCCT CGATTTAGTC AAAAACCAAG ACGGTGCCAT CGTAGGCTGT ACTGCGATTG AAATCGAGAC TGGTGAAATT GTTTACTTCA AAGCCAAAGC CACTGTGTTA GCAACAGGCG GTGCAGGTCG TATCTACGCA TCAACCACAA ACGCACACAT TAATACTGGT GACGGTGTCG GTATGGCAAT GCGTGCTGGC GTTCAGATGC AAGATATGGA AATGTGGCAA TTCCACCCAA CCGGTATCGC TGGTGCTGGT GTACTTGTGA CTGAAGGTTG TCGTGGTGAA GGTGGTTACC TACTAAACAA AGACGGCGAG CGTTTCATGG AGCGTTATGC ACCAAACGCG AAGGATTTGG CATCTCGTGA CGTGGTTGCA CGTTCTATGA TGACCGAAAT CCGTGAAGGT CGTGGTTTAG ATGGCCCATT AGGCCCACAC TGCTTACTGA AACTCGATCA CTTAGGTAAA GAGACCTTAG AAGCCCGTCT ACCAGGCGTG TGTGAATTAT CTCGTACCTT CGCTCACATC GATCCGGCCG ATGGTCCAAT CCCAGTATTA CCAACTTGTC ACTATATGAT GGGTGGTCTG CCGACTAAGG TGAGTGGTCA GGTTATTCGT AAGAATACTG ATGGTACTGA GCAAGACGTA GTCGGTCTGT TTGCTGTTGG TGAGATTGCC TGTGTATCTG TGCACGGTGC TAACCGCTTA GGCGGTAACT CATTGCTCGA CCTAGTGGTC TTTGGCCGCG CCGCTGGTCA ACACTTAGGT AAAGCGCTCG ATGAGACTGC GGATCCTAAG GATGCCACTG ATGCCGACAT CCAAGCTTCT CTGGCACGTT TACAACGCTG GGAAAGCAAT AAAGATGGTG AAGATCCAGT GCAAATCCGT AAGGATTTAC AACTTTGCAT GCAATTAAAC TTCTCAGTAT TCCGTCGTGG CGATGCAATG GCTGAAGGTT TAGAGCAGTT AAAAGCCATC CGTAAGCGTT TAGAAAATGC TAAGTTGTCT GATAACTCTC GCGAGTTTAA CACCCAACGT ATCGAGTGTT TAGAATTGGA CAACCTGATG GCGACGGCGA TTGCTACCGC TTATGCTGCT AACTTCCGTA CAGAGAGCCG CGGTGCTCAC TCACGTGAAG ATTATTTAGA GCGTGACGAT GAAAACTGGT TATGTCACAG TCTGTTTGAC CCAGTGACAG AAACCATGGA CCGTCGTGCT GTGAATATGG CACCTAAGTT GCGTGAAGCC TTCCCGCCGA AGAAACGTAC CTACTAG
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Protein sequence | MSIPVREFDA VVIGAGGAGM RAALQISKEG KSCALLSKVF PTRSHTVSAQ GGITVALGNA HEDHWEQHMY DTVKGSDFIG DQDAIEFMCQ TGPEAIIELE HMGLPFSRFD NGKIYQRPFG GQSKNFGGEQ AARTAAAADR TGHALLHCLY QQNVKHKTQV FSEWYALDLV KNQDGAIVGC TAIEIETGEI VYFKAKATVL ATGGAGRIYA STTNAHINTG DGVGMAMRAG VQMQDMEMWQ FHPTGIAGAG VLVTEGCRGE GGYLLNKDGE RFMERYAPNA KDLASRDVVA RSMMTEIREG RGLDGPLGPH CLLKLDHLGK ETLEARLPGV CELSRTFAHI DPADGPIPVL PTCHYMMGGL PTKVSGQVIR KNTDGTEQDV VGLFAVGEIA CVSVHGANRL GGNSLLDLVV FGRAAGQHLG KALDETADPK DATDADIQAS LARLQRWESN KDGEDPVQIR KDLQLCMQLN FSVFRRGDAM AEGLEQLKAI RKRLENAKLS DNSREFNTQR IECLELDNLM ATAIATAYAA NFRTESRGAH SREDYLERDD ENWLCHSLFD PVTETMDRRA VNMAPKLREA FPPKKRTY
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