| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1925 |
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| Symbol | |
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| ID | 1169686 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 2027826 |
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| End bp | 2028890 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637343809 |
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| Product | HlyD family secretion protein |
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| Protein accession | NP_717532 |
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| Protein GI | 24373489 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAAGT CTAAAATTGT GAAGTTCGCC CTGCCCGTAC TATTAGTGTC AATGTTGGCG
GCTTGTGGTG AAGAGGAAGT GGCTAAAAAA GAAGAAAAAT ATGCCATTCC CGTTGAAACC
ACCACCGTCA TTCAGGGAAA TGTCTCATCT TTTTATAGCA CCACAGCCAC CCTTGAAGCA
CCACAGGAAG CCAACGTGGT GAGCCGCATT GCAGGCCTCA TTGAAGTTAT AAATGTGGAA
GAAGGCGATC GTGTAAAAAA AGGACAAAGT CTGGCCATTA TTGATGCTAA ACGTCAGCAA
TATGATTTAG ACCGTTCAGA AGCCGAGGTC AAAATTATCG AGCAAGAGTT AAACCGCTTA
AAGAAAATGA ACAATAAAGA GTTTATCAGT GCCGATTCTA TGGCCAAGCT TGAATACAAC
TTACAAGCAG CCATTGCTAG ACGGGATCTT GCCGAGTTGC AAGTGAAAGA AAGCCACGTG
GTTTCACCAA TTGATGGCAT TATTGCCAAG CGTTATGTGA AAGCGGGAAA TATGGCAAAA
GAATTCGGCG ATTTGTTCTA CATCGTAAAT CAAGATGAAC TGCACGGCAT TGTGCATTTG
CCAGAGCAGC AATTAACCAG TTTGCGCTTA GGTCAAGAAG CTCAAGTCTT TAGCAATCAA
CAAAGTAAAA ATGCAATTAA CGCGAAAGTG TTACGTATCA GCCCAGTCGT TGATCCACAA
AGTGGTACCT TTAAAGTCAC TTTAGCTGTC CCCAATCAAG ATGCACGCTT AAAAGCAGGC
ATGTTCACAC GGGTCGAACT GAAATATGAC ACCCATGAAA ATGTCATTAC CGTGCCCTAT
AGCGCCCTCA TTAATCAAGA CAATAAGCAA GCACTATATG TGATTGCCGG TACTAATGCC
AACCGCCGCG AAGTCGAAAT TGGCTACCGC GAAGGTGACG CTGTCGAAAT TGTGTCCGGT
ATCAAACCTG GCGAGGTCGT CGTCACCCGC GGTCAGCAAA ATTTGAAAGA CCAGTCCTTA
GTTGAAGTCA TTACTCCACT CGATTTGGCC TCAGCGAAAA ACTGA
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| Protein sequence | MEKSKIVKFA LPVLLVSMLA ACGEEEVAKK EEKYAIPVET TTVIQGNVSS FYSTTATLEA
PQEANVVSRI AGLIEVINVE EGDRVKKGQS LAIIDAKRQQ YDLDRSEAEV KIIEQELNRL
KKMNNKEFIS ADSMAKLEYN LQAAIARRDL AELQVKESHV VSPIDGIIAK RYVKAGNMAK
EFGDLFYIVN QDELHGIVHL PEQQLTSLRL GQEAQVFSNQ QSKNAINAKV LRISPVVDPQ
SGTFKVTLAV PNQDARLKAG MFTRVELKYD THENVITVPY SALINQDNKQ ALYVIAGTNA
NRREVEIGYR EGDAVEIVSG IKPGEVVVTR GQQNLKDQSL VEVITPLDLA SAKN
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