Gene SO_1870 details

Gene Information

• Locus tag: SO_1870
• Symbol: speA
• ID: 1169637
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 1961796
• End bp: 1963709
• Gene Length: 1914 bp
• Protein Length: 637 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637343761
• Product: arginine decarboxylase
• Protein accession: NP_717478
• Protein GI: 24373435
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG1166] Arginine decarboxylase (spermidine biosynthesis)
• TIGRFAM ID: [TIGR01273] arginine decarboxylase, biosynthetic

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATGATT GGTCTATTGA AGCTGCTCGT GCTGGGTACA ACGTTACCCA CTGGAGCCAA 
GGGTTTTATG GGATCAGCGA CGAAGGTGAG GTGACTGTAT CACCGGATCC TAAGAATCCT 
GATCACAAGA TTGGCTTAAA TGAGCTAGCA AAAGACATGG TAAAAGCGGG GGTCGCTTTA 
CCTGTATTAG TTCGTTTCCC GCAAATTCTG CACCATAGAG TGAACAGTTT GTGCCAAGCA 
TTCGACCAAG CGATACAAAA ATATGAGTAT CAGGCGGACT ATTTGTTGGT TTACCCCATT 
AAAGTTAACC AACAAAAAAC CGTGGTAGAA GAAATTCTTG CGAGCCAAGC ATCAAAAGAA 
GTTCCACAAT TAGGCCTAGA AGCGGGCAGT AAACCTGAGT TAATGGCAGT ACTTGCCATG 
GCGCAAAAAG CCAGCTCGGT AATCGTATGT AATGGTTATA AAGATAACGA ATACATCCGC 
TTAGCCTTAA TTGGTGAAAA GTTAGGCCAT AAGGTCTACA TCGTGTTAGA AAAACTGTCT 
GAGCTGAAGA TGGTACTGGC CGAGTCTAAG CGTTTAGGGG TGAAACCTCG CTTAGGATTA 
CGTGCTCGTC TCGCGTTCCA AGGCAAAGGC AAGTGGCAAG CTAGCGGTGG TGAAAAATCT 
AAGTTTGGTT TATCTGCCGC GCAAATTTTG ACTGTAGTTG ATCAGTTAAA ACAAAGCGAT 
ATGTTAGATT CACTGCAATT ATTGCACTTT CACTTAGGTT CGCAAATCGC CAACATCCGC 
GATATTCGTC AAGGTGTGAG TGAAGCTGCG CGTTTCTACT GTGAATTACG TGAGCTGGGC 
GCTAGCATCA ATTGTTTCGA CGTCGGTGGT GGTTTAGCTG TAGATTACGA TGGCACGCGT 
AGCCAAAGTA ATAACTCAAT GAACTATGGC TTAAGCGAAT ATGCAAACAA CATCGTTAAC 
GTGCTCACCG ATATCTGTAA TGAATACGAG CAACCAATGC CACGTATTAT TTCTGAATCG 
GGTCGTCACT TAACGGCGCA CCATGCGGTA CTGATCACCG ATGTGATTGG CACTGAAGCC 
TATCAGGTTG AAGATATCCA GCCACCAGAG GAAGAGTCGC CACAGCTGCT GCACAACATG 
TGGCAATCTT GGACTGAGCT GAGCGGCCGC GCCGATCAGC GTGCATTGAT TGAGATTTAC 
CACGACAGCC AAAGCGATTT ACAAGAAGCG CAATCACTGT TTGCCTTAGG CCAATTAAGT 
CTGGCAGAAC GTGCGTGGGC CGAGCAGGCA AACCTGCGCG TATGCCACGA AGTTCAAGGC 
TTATTAAGCA CCAAAAACCG TTATCACAGA CCGATTATCG ATGAATTAAA CGAAAAGTTA 
GCCGATAAGT TCTTCGTTAA CTTCTCGTTA TTCCAATCCT TACCGGATGC GTGGGGTATC 
GATCAGGTAT TCCCTGTGCT GCCTTTATCG GGGTTAGATA AAGCGCCAGA GCGCCGTGCC 
GTGATGTTGG ATATTACCTG TGATTCCGAC GGTATTGTGG ATCAATACGT AGACGGTCAA 
GGGATTGAAA CTACATTGCC AGTACCAGCG TGGAGTGCTG AAAGCCCGTA TTTGATCGGC 
TTCTTTATGG TGGGCGCATA TCAAGAGATT TTAGGGGATA TGCACAACCT GTTTGGTGAT 
ACCAACTCCG CGGTTGTCAG CATTGAAGAA AACGGTATGA CCAATATTGA GTCAGTACTT 
GCCGGTGATA CTGTGGCTGA CGTGTTACGC TATGTTAACT TAGATGCGGT CGACTTTATG 
CGTACCTATG AAGAGTTAGT CAACCAGCAC ATTGCTGAAG ATGAACGCGC ACAAATTTTA 
GAAGAATTGC AAGTGGGCCT GAAAGGCTAC ACTTATTTAG AAGATTTTTC TTAA 

 

Protein sequence

MNDWSIEAAR AGYNVTHWSQ GFYGISDEGE VTVSPDPKNP DHKIGLNELA KDMVKAGVAL 
PVLVRFPQIL HHRVNSLCQA FDQAIQKYEY QADYLLVYPI KVNQQKTVVE EILASQASKE 
VPQLGLEAGS KPELMAVLAM AQKASSVIVC NGYKDNEYIR LALIGEKLGH KVYIVLEKLS 
ELKMVLAESK RLGVKPRLGL RARLAFQGKG KWQASGGEKS KFGLSAAQIL TVVDQLKQSD 
MLDSLQLLHF HLGSQIANIR DIRQGVSEAA RFYCELRELG ASINCFDVGG GLAVDYDGTR 
SQSNNSMNYG LSEYANNIVN VLTDICNEYE QPMPRIISES GRHLTAHHAV LITDVIGTEA 
YQVEDIQPPE EESPQLLHNM WQSWTELSGR ADQRALIEIY HDSQSDLQEA QSLFALGQLS 
LAERAWAEQA NLRVCHEVQG LLSTKNRYHR PIIDELNEKL ADKFFVNFSL FQSLPDAWGI 
DQVFPVLPLS GLDKAPERRA VMLDITCDSD GIVDQYVDGQ GIETTLPVPA WSAESPYLIG 
FFMVGAYQEI LGDMHNLFGD TNSAVVSIEE NGMTNIESVL AGDTVADVLR YVNLDAVDFM 
RTYEELVNQH IAEDERAQIL EELQVGLKGY TYLEDFS