Gene SO_1815 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_1815 
Symbol 
ID1169588 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp1904744 
End bp1905658 
Gene Length915 bp 
Protein Length304 aa 
Translation table11 
GC content46% 
IMG OID637343702 
Producthistone deacetylase/AcuC/AphA family protein 
Protein accessionNP_717423 
Protein GI24373380 
COG category[B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCCCAT TGGTTTATCA CGCCAGCTAC TCTAAGCTGG CGTTACCCAT CCACCATCGC 
TTCCCTACCA CAAAATACGC ACATCTTTAT CAGTATCTGC TCGATAACCA ACTTGCCACG 
CCTACACAAT TTCACACTCC TACGCCAATG ACAGCCGAAG AGATAATGCA AGTGCACCAT 
CGGGATTACG TTGAGCAGTT TATTGATGGC ACCTTAGCGA CTTCTGCACT CAGGCGCATT 
GGATTTCCCT GGAGTGAAGC ATTGGTCGAG CGCACTTTGC ATTCCCTTGC GGGCACCAGT 
TTGACAGCAG CCTTAGCATT GCAAACAGGC ATTGCACTGC ACTTAACTGG AGGTTATCAC 
CATGCGCATT ATGAGTTCGG CAGTGGCTAC TGTATTTTCA ATGACTTAAT TATTGCGGCG 
AGAAAGCTTA TCATAGAGCA GCAACTGCAT AAGATTTTGA TTTTTGATTG TGATGTTCAC 
CAAGGCGATG GCACCGCCAC ACTTAGCCAA CTACATCAAG GGATTATCAG TTGCTCTATT 
CACTGCAAAG ACAACTTCCC CAGCCGTAAA CAACATTCAC ACTATGATAT TGAACTTGTT 
AAAGGCACTG ATGATAGCGC CTATTTAGAC ACCGTTGAGC AGACTCTCGA GTTGCTAATT 
CGTCTACATC AACCGGATTT AATCCTCTAT GACGCTGGCG TTGATATCCA TCAGGATGAT 
GACTTAGGCC ATCTACAGAT CAGCCAGCAA GGGCTCTATC AGCGTGATGT TACTGTGCTC 
TCCATGGCAA GAGCGGCAAA TATTCCTGTC GCCGCGGTAA TTGGCGGCGG CTATAGCAGA 
GACGCACTAC AATTAAGCCA AAGACATAGC CAACTTTTTA TTGCAGCAAA CCATTTATGG 
TTGCAAACTC AATAA
 
Protein sequence
MIPLVYHASY SKLALPIHHR FPTTKYAHLY QYLLDNQLAT PTQFHTPTPM TAEEIMQVHH 
RDYVEQFIDG TLATSALRRI GFPWSEALVE RTLHSLAGTS LTAALALQTG IALHLTGGYH 
HAHYEFGSGY CIFNDLIIAA RKLIIEQQLH KILIFDCDVH QGDGTATLSQ LHQGIISCSI 
HCKDNFPSRK QHSHYDIELV KGTDDSAYLD TVEQTLELLI RLHQPDLILY DAGVDIHQDD 
DLGHLQISQQ GLYQRDVTVL SMARAANIPV AAVIGGGYSR DALQLSQRHS QLFIAANHLW 
LQTQ