Gene SO_1812 details

Gene Information

• Locus tag: SO_1812
• Symbol: mdeA
• ID: 1169585
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 1902200
• End bp: 1903393
• Gene Length: 1194 bp
• Protein Length: 397 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 637343699
• Product: methionine gamma-lyase
• Protein accession: NP_717420
• Protein GI: 24373377
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases
• TIGRFAM ID: [TIGR01328] methionine gamma-lyase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAAGATA AATCAAGCAA AATGTGGAAA GCGGCGACCC AAGCCATTCA TGCCGGACAT 
GAGCGAGAGG CCTTCGGTTC TTTAGTCACA CCACTTTATC AAACTGCAAC TTTTGTGTTT 
GATTCGGCGC AGCAGGGGGG CGAACGTTTT GCGGGTAACG AGCCAGGCTA TATCTACACC 
CGCCTTGGTA ATCCGACCGT TGCAGAGCTC GAGCGTAAAA TGGCGATATT AGAACGGGCT 
GAAGCCGCAG CAGCAACTGC ATCGGGGATG GGGGCGGTTT CGGCAGCGCT ACTTGCAAAC 
TTACAGATAG GTGATCATCT TGTGGCATCT AATGCGGTAT ATGGGTGTAC TTTTGCGCTA 
ATGACCAACC AATTTGCCCG TTTCGGTATT GAGGTGACTT TAGTTGACTT TAGTGATGTA 
GAGTTGATTG AGCGGGCTAT TAAACCCAAT ACCAAGGTGA TTTTTTGTGA AACGCCAGTG 
AATCCTCATT TGCAGGTATT TGATCTGAGC GCCATTGCAG CTATTGCCAA ACGACATAGT 
CTGACAAGTA TTGTCGATAA TACGTTTATG ACGCCGCTGC TGCAGCAACC GATAGCGCTG 
GGCATTGATG TTGTGGTGCA CAGTGCGACT AAGTACTTAA ATGGGCATGG TGATGTGATT 
GCGGGCATTG TTTGTGGTAG TGAAGCACAA TTGCACCGAG TCAAATATGA AATTCTTAAA 
GATATTGGTG CGGTGATGTC TCCCCACGAT GCTTGGCTTA TCCTACGAGG CCTTAAAACC 
TTAGATGTGC GCTTGCAACG CCATTGTGAG AGTGCGCAGC GGGTTGCTGA GTTTTTAGAG 
CAACACCCTG CAGTGACACG AGTTTACTAT CCAGGACTTA AATCCCATTC AGGTCATCGA 
TTTATCGGCC AACAGATGCG GCGTGCAGGA GGGGTGATCG CCTTTGAATT AGCCGCTGAT 
TTTACTCAGG CGATGGCGTT TGTTGGCAAC CTTAAATTAT TTTCGATTGC GGTCAGTCTG 
GGCGATGCGG AATCTCTTAT TCAACATCCG GCTTCAATGA CCCACTCTCC TTATTCGCCA 
GAAGCGCGTG CCGCAGCCGG AATTGGTGAT AATCTGCTGA GAATTTCTGT CGGTTTAGAG 
GATTGCGACG ATATCATCGC TGATTTGAGC CAGGCATTAG CTGCGTTAGT GTAA 

 

Protein sequence

MQDKSSKMWK AATQAIHAGH EREAFGSLVT PLYQTATFVF DSAQQGGERF AGNEPGYIYT 
RLGNPTVAEL ERKMAILERA EAAAATASGM GAVSAALLAN LQIGDHLVAS NAVYGCTFAL 
MTNQFARFGI EVTLVDFSDV ELIERAIKPN TKVIFCETPV NPHLQVFDLS AIAAIAKRHS 
LTSIVDNTFM TPLLQQPIAL GIDVVVHSAT KYLNGHGDVI AGIVCGSEAQ LHRVKYEILK 
DIGAVMSPHD AWLILRGLKT LDVRLQRHCE SAQRVAEFLE QHPAVTRVYY PGLKSHSGHR 
FIGQQMRRAG GVIAFELAAD FTQAMAFVGN LKLFSIAVSL GDAESLIQHP ASMTHSPYSP 
EARAAAGIGD NLLRISVGLE DCDDIIADLS QALAALV