Gene SO_1795 details

Gene Information

• Locus tag: SO_1795
• Symbol: clpX
• ID: 1169568
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 1882709
• End bp: 1883989
• Gene Length: 1281 bp
• Protein Length: 426 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637343683
• Product: ATP-dependent protease ATP-binding subunit ClpX
• Protein accession: NP_717404
• Protein GI: 24373361
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG1219] ATP-dependent protease Clp, ATPase subunit
• TIGRFAM ID: [TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX)

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGCGACA ACAAAAATAA TGGTGACAGC GGTAAGTTGC TGTACTGCTC TTTTTGCGGT 
AAGAGCCAGC ATGAAGTCAG AAAACTGATT GCAGGCCCAT CAGTATATGT ATGCGACGAA 
TGTGTAGAAC TATGTAACGA CATCATTCGT GAAGAGATTA AAGAAATCTC TCCCAAGCGT 
GATAATGACA AATTGCCAAC GCCACACGAG TTGCGCGCGC ATTTAGACGA TTATGTGATT 
GGTCAGGACA GAGCTAAAAA AGTGCTTTCT GTTGCGGTAT ACAATCACTA TAAGCGCCTG 
AAAAATTCAT CTCCAAAAGA TGGTGTTGAA TTAGGCAAAA GTAACATTTT GCTTATTGGT 
CCAACGGGTA GTGGTAAAAC CCTTCTGGCC GAAACGCTTG CGCGCTCATT GAATGTGCCT 
TTTACCATGG CGGATGCCAC AACACTGACC GAGGCTGGTT ATGTGGGTGA AGACGTTGAA 
AACATCATTC AAAAGCTATT GCAAAAATGC GATTACGATG TTGAAAAAGC ACAACGTGGT 
ATCGTGTATA TCGACGAAAT CGACAAAATC AGCCGTAAAT CGGATAACCC TTCGATAACC 
CGTGACGTAT CGGGTGAAGG CGTGCAGCAA GCGCTGTTAA AGCTCATCGA AGGTACGGTT 
GCCGCGGTTC CGCCACAAGG TGGTCGCAAA CATCCACAGC AAGAGTTCTT ACAGGTTGAT 
ACTTCTAAGA TCCTATTTAT CTGTGGTGGT GCATTTGCGG GCCTTGAAAA GGTGATTGAG 
CAGCGTGCCC ACGTTGGCTC TGGTATCGGT TTCGGTGCGC AGGTGAAAGG TGAAAAGGAT 
AAGGCAACGA TATCTGAAAC CCTGTCTCAA GTTGAGCCGG GCGATTTAGT TAAATATGGC 
TTGATCCCTG AATTTATCGG CCGTCTTCCT GTGGTTGCTA CGCTAACAGA GTTAGATGAA 
GAAGCCCTAG TGCAAATTTT GTCTGAACCT AAAAATGCCT TAACGAAACA ATACAACGCG 
CTTTTTGAGA TGGAGGGTGT TGAGCTTGAG TTCCGCGAAG ATGCGCTTAA AGCCATTGCT 
CATAAGGCAA TGTCACGCAA AACCGGAGCA CGTGGCTTAC GTTCAATCGT AGAAGGTATT 
TTACTCGATA CTATGTATGA TATCCCTTCG ATTGATGGCG TTGTAAAAGC GGTAGTTGAT 
GAGTCTGTTG TCAATGGTGA GTCTGCGCCC ATTCTGATTT ACGAGCGCAA CGAAACACAG 
GTTGCCTCTG GCGAGCAATA A 

 

Protein sequence

MGDNKNNGDS GKLLYCSFCG KSQHEVRKLI AGPSVYVCDE CVELCNDIIR EEIKEISPKR 
DNDKLPTPHE LRAHLDDYVI GQDRAKKVLS VAVYNHYKRL KNSSPKDGVE LGKSNILLIG 
PTGSGKTLLA ETLARSLNVP FTMADATTLT EAGYVGEDVE NIIQKLLQKC DYDVEKAQRG 
IVYIDEIDKI SRKSDNPSIT RDVSGEGVQQ ALLKLIEGTV AAVPPQGGRK HPQQEFLQVD 
TSKILFICGG AFAGLEKVIE QRAHVGSGIG FGAQVKGEKD KATISETLSQ VEPGDLVKYG 
LIPEFIGRLP VVATLTELDE EALVQILSEP KNALTKQYNA LFEMEGVELE FREDALKAIA 
HKAMSRKTGA RGLRSIVEGI LLDTMYDIPS IDGVVKAVVD ESVVNGESAP ILIYERNETQ 
VASGEQ