Gene SO_1780 details

Gene Information

• Locus tag: SO_1780
• Symbol: mtrF
• ID: 1169554
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 1864144
• End bp: 1866063
• Gene Length: 1920 bp
• Protein Length: 639 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 637343666
• Product: decaheme cytochrome c MtrF
• Protein accession: NP_717389
• Protein GI: 24373346
• TIGRFAM ID: [TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATAAGT TTGCAAGCTT TACCACGCAA TACAGTCTGA TGCTGCTCAT TGCCACGCTA 
CTCTCTGCCT GTGGAGGCAG TGATGGTGAT GATGGCTCAC CCGGCGAGCC AGGTAAACCT 
CCGGCAATGA CAATCAGCAG CCTAAATATC AGTGTAGATA AAGTCGCCAT CAGCGATGGT 
ATTGCCCAAG TTGATTATCA AGTCAGCAAC CAAGAAAACC AAGCCGTAGT GGGTATTCCT 
TCCGCCACCT TTATCGCTGC GCAATTACTG CCTCAAGGCG CTACAGGCGC TGGCAATAGT 
AGTGAGTGGC AGCATTTTAC CTCAGAAACC TGCGCCGCTT CATGTCCCGG CACTTTCGTC 
GATCATAAAA ACGGCCATTA TAGTTATCGC TTTAGTGCGA CATTCAACGG CATGAATGGG 
GTGACATTTC TAAGTGATGC CACCCAACGC TTAGTGATAA AAATCGGTGG TGATGCGCTC 
GCCGATGGCA CTGTACTCCC TATAACCAAC CAACATTATG ATTGGCAGTC CTCAGGCAAT 
ATGCTGGCCT ATACCCGTAA CTTAGTCTCG ATCGACACTT GTAATAGTTG CCATAGTAAT 
TTGGCTTTCC ATGGAGGACG TTATAATCAA GTTGAAACCT GTGTGACCTG CCATAACAGT 
AAAAAAGTCA GCAATGCCGC GGATATTTTC CCGCAAATGA TCCACAGTAA ACATTTAACC 
GGATTCCCTC AATCCATCAG TAATTGCCAG ACTTGCCATG CTGATAACCC TGATTTGGCC 
GATCGTCAAA ATTGGTACCG AGTACCGACC ATGGAAGCCT GCGGTGCATG TCATACTCAA 
ATCAATTTCC CTGCGGGTCA AGGCCACCCA GCGCAAACGG ATAATAGCAA TTGCGTTGCC 
TGTCACAATG CAGATTGGAC GGCAAACGTG CACAGTAATG CAGCTCAAAC CTCTGCCTTG 
GCTCAGTTTA ATGCAAGCAT CAGCAGTGCC AGTATGGATG CCAATGGCAC AATCACGGTC 
GCGGTGAGCC TAACCAACCC AACCACAGGA ACCGCTTATG CTGATAGCGC CGATAAATTA 
AAATTTATTA GTGACTTAAG GATTTATGCT AACTGGGGAA CCAGCTTCGA CTACAGCAGC 
CGTTCTGCTC GCTCGATTAG ACTTCCGGAA TCAACCCCCA TAGCAGGAAG CAATGGAACA 
TACAGCTACA ATATTTCAGG TCTCACAGTA CCCGCAGGTA CTGAGTCCGA CCGTGGCGGA 
TTGGCCATTC AAGGTCGAGT GTGCGCAAAA GATAGTGTCT TAGTGGATTG CAGCACCGAA 
CTGGCAGAAG TGCTTGTGAT CAAATCAAGT CACAGTTACT TCAATATGTC TGCATTAACC 
ACCACAGGCA GACGCGAAGT CATCAGTAAT GCAAAATGTG CTAGCTGCCA TGGCGATCAG 
CAATTAAACA TCCATGGCGC CCGCAACGAT TTAGCGGGTC AATGTCAGCT CTGCCACAAT 
CCGAATATGC TCGCCGACGC CACAGCAACC AACCCATCGA TGACATCTTT TGATTTTAAA 
CAGTTAATCC ACGGGCTCCA TAGCAGCCAA TTTGCAGGTT TTGAAGACCT CAATTACCCT 
GGGAATATCG GTAATTGCGC CCAATGCCAC ATCAACGATT CGACAGGTAT CTCTACTGTA 
GCCCTCCCCT TAAATGCGGC CGTTCAACCT CTCGCGCTTA ACAATGGCAC CTTCACCAGT 
CCAATTGCCG CTGTATGTAG CAATTGTCAC TCAAGTGATG CAACTCAAAA TCATATGAGG 
CAACAAGGTG CAGTGTTTGC CGGAACCAAA GCCGATGCAA CCGCAGGCAC TGAAACCTGT 
GCATTTTGCC ACGGACAAGG CACTGTCGCC GACGTACTCA AAGTCCATCC AATAAACTAA 

 

Protein sequence

MNKFASFTTQ YSLMLLIATL LSACGGSDGD DGSPGEPGKP PAMTISSLNI SVDKVAISDG 
IAQVDYQVSN QENQAVVGIP SATFIAAQLL PQGATGAGNS SEWQHFTSET CAASCPGTFV 
DHKNGHYSYR FSATFNGMNG VTFLSDATQR LVIKIGGDAL ADGTVLPITN QHYDWQSSGN 
MLAYTRNLVS IDTCNSCHSN LAFHGGRYNQ VETCVTCHNS KKVSNAADIF PQMIHSKHLT 
GFPQSISNCQ TCHADNPDLA DRQNWYRVPT MEACGACHTQ INFPAGQGHP AQTDNSNCVA 
CHNADWTANV HSNAAQTSAL AQFNASISSA SMDANGTITV AVSLTNPTTG TAYADSADKL 
KFISDLRIYA NWGTSFDYSS RSARSIRLPE STPIAGSNGT YSYNISGLTV PAGTESDRGG 
LAIQGRVCAK DSVLVDCSTE LAEVLVIKSS HSYFNMSALT TTGRREVISN AKCASCHGDQ 
QLNIHGARND LAGQCQLCHN PNMLADATAT NPSMTSFDFK QLIHGLHSSQ FAGFEDLNYP 
GNIGNCAQCH INDSTGISTV ALPLNAAVQP LALNNGTFTS PIAAVCSNCH SSDATQNHMR 
QQGAVFAGTK ADATAGTETC AFCHGQGTVA DVLKVHPIN