Gene SO_1653 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_1653 
SymbolrfbD 
ID1169447 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp1741411 
End bp1742397 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content51% 
IMG OID637343561 
ProductdTDP-4-dehydrorhamnose reductase 
Protein accessionNP_717264 
Protein GI24373221 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1091] dTDP-4-dehydrorhamnose reductase 
TIGRFAM ID[TIGR01214] dTDP-4-dehydrorhamnose reductase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGGATG TCACTCCCGC GCGACCAACA GTCCTCTTAA CTGGCGCGCA CAGCCAACTG 
GCGAAAGCAT TAATCCGAAC GCATCTCAAT GGTGGATTAG TATTTAATCT CCATCCGCTT 
ACGCATGCAG CCTTAGATAT CAGCGATAAA TACAGTGTGG CTGAGGTGTT TGCGCAGGTG 
AAACCCGACT GGGTGATTAA CTGCGCGGCC TATAATGCGG TCGACAAGGC TGAGACGGCG 
GTGGATGAGG CTTATCGCGT CAATAGCCTC GGCCCAGAAT TATTGGCAAC CGAATGTGCG 
CTCACGGGCG CGCGGTTAGT GCATATTTCC AGTGATTATG TTTTTAGCGG TCTGCTTACG 
GGAGTTGAGG CAAATGCCTT AAGTGAAACT GTGACACCTT CACCATTATC CGTTTATGGC 
AAGAGTAAGC TCGCCGGAGA GCAAGCGGTG CAGCGTATCT TGGGTGAGCG CGCAATTGTT 
ATTCGTACCG CATGGCTGTA CGGGGTCGAT GGGCATAATT TTGTGAAAAC CATGCTGAGG 
TTGATGGCCG CCACGCCCGA TGCTCAGCCG CTCTTTGTGA TTGACGATCA AATTGGCTCA 
CCTACGTGGG TCGATGCCCT CGCGTCGCTT ATCTGGCAAC TGATGCTAAG GGGCGAGTCG 
GGGCTATTCC ATTACGCTGG GCAGGGGCAA TGCAGTTGGT ATGAATTTGC TGCTGAAATT 
CAGCAGCAAG CGTTGGCTCT GAAGTTATTA AAGAAAGCCG TGCCTATCAT TGCCACTGAT 
AGCCTCAGTT ATGCCGCCAA AGCGCTTGAG AAAGGCAATG TGCTGGCACA AAGGCCGAGT 
TACAGCGCGC TTAATAGCGC TAAACTACGA GATACGCTAG GGAAGGATAA TCTTGCCGCA 
ATACAATGTC CTGAAGTTTG GCAGGATTGG CGAGTACAAC TCAACTGCAT GCTTAACGCC 
CTTATAACAC AAAGTGCAAA ACCTTAA
 
Protein sequence
MQDVTPARPT VLLTGAHSQL AKALIRTHLN GGLVFNLHPL THAALDISDK YSVAEVFAQV 
KPDWVINCAA YNAVDKAETA VDEAYRVNSL GPELLATECA LTGARLVHIS SDYVFSGLLT 
GVEANALSET VTPSPLSVYG KSKLAGEQAV QRILGERAIV IRTAWLYGVD GHNFVKTMLR 
LMAATPDAQP LFVIDDQIGS PTWVDALASL IWQLMLRGES GLFHYAGQGQ CSWYEFAAEI 
QQQALALKLL KKAVPIIATD SLSYAAKALE KGNVLAQRPS YSALNSAKLR DTLGKDNLAA 
IQCPEVWQDW RVQLNCMLNA LITQSAKP