| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1644 |
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| Symbol | dnaE |
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| ID | 1169438 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 1726307 |
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| End bp | 1729783 |
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| Gene Length | 3477 bp |
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| Protein Length | 1158 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637343552 |
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| Product | DNA polymerase III subunit alpha |
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| Protein accession | NP_717255 |
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| Protein GI | 24373212 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGATC CTCGTTTTGT GCATCTGCGT GTCCACAGTG ACTTTTCCAT GTCTGATGGT
GTGGCTAAGG TCAAGCCGAT CCTCGCTCAA GTTGAAGCGA AAGGAATGGC GGCGGTGGCT
TTGACGGATC AAAACAACCT CTGTGGTTTA GTCAAGTTTT ACGGCGGTTG CCACGGTGCG
GGGATCAAGC CGATTATTGG CGCGGACTTT TGGATGCAAG TGCCAGGCTT TGAGGATGAA
TTTTGTGCTG TCACCATTAT CGCAATGGAT AATGAAGGCT ATCAAAATCT CACTCAAATC
ATCAGCCAAG CCTATTTACG TGGTCAAGTT CAAGGGCGTG TAGTGATTGA CCAAGAGTGG
TTGATCACTT ACAACCCTGG CATTTTGCTA CTGTCTGGCG GCAAAGAAGG GGACATAGGT
AAAGCGCTGC TAAAAGGCAA CAATACCCAA GTCGAGTCGT TATGCGAGTT TTATCAGCAG
CATTTTGAGG GGCGTTATTT CCTCGAATTA TTGCGTACAG GGCGCCCCGA TGAGGAACGT
TACCTGCATA TGGCGGTGGG AGTAGCGCAG GAAAAGGGCA TTCCGGTGGT AGCCACCAAT
CAGGTGGTGT TTTTAAAGCC TGAGGACTTT GAGGCACATG AAATCCGGGT CGCGATTCAT
GATGGTTTTA CGCTTGCCGA TCCGCGCCGT CCTAAAAAGT ACAGTGAGCA GCAGTACCTT
CGCAGTGAAG ATGAAATGTG CGAACTGTTT GCCGATATTC CCGCAGCCCT TGCCAATACG
GTTGAAATTG CTAAACGCTG TAACGTCACC ATCCGTTTAA ACGAATACTT TTTACCCAAT
TTTCCTACCG GCGACATGTC AATTGAAGAT TTTCTGGTTG ATTGCTCGAA AAAAGGGCTT
GAAGAACGTT TAGCATTTTT ATTCCCCGAT CCACAAGTGC GCGCCGAGCG CCGCGGTGAG
TACGATGAGC GTCTCGATGT GGAGCTCAAG GTGATTAACC AGATGGGCTT TCCTGGTTAC
TTCTTGATCG TGATGGAGTT TATCCAGTGG GGCAAGGATA ATGGTATTCC TGTCGGCCCG
GGCCGTGGTT CGGGCGCCGG ATCACTTGTG GCCTACGCTC TTAAGATTAC CGACTTAGAC
CCACTCGAAT TCGACCTGCT GTTCGAACGT TTCTTGAACC CAGAGCGGGT GTCGATGCCC
GACTTCGACG TCGACTTCTG TATGGATAGA CGCGACGAGG TGATTGATCA CGTGGCCGAA
CTCTACGGCC GTGAAGCGGT ATCGCAAATT ATCACCTTCG GTACTATGGC GGCAAAAGCG
GTTATCCGTG ACGTGGGCCG GGTGCTCGGT CATCCCTACG GCTTTGTGGA TCGTATTTCA
AAGCTTATCC CACCAGAGCC TGGGATGACA CTGGCCAAAG CTTTTGAAGT GGAGCCAGCA
CTGCAGGAAT CTTACGATGC CGATGAGGAT GTCAAAGATC TTATCGACAT GTGTCGTAAA
CTTGAGGGCG TCACCCGAAA CGCGGGTAAA CACGCGGGGG GCGTGGTCAT CGCGCCCACC
AAGATCACCG ACTTTTCGCC GCTATACTGC GACGCCGAAG GTAAAAACCC CGTCACTCAG
TTTGATAAAA ACGATGTTGA AACCGCAGGG TTAGTGAAGT TCGACTTCCT TGGGCTTAGA
ACGCTCACCA TCGTCGATTG GGCGCTGGAA ATGATCAACA AGGTGGAGGT CAAAAATGGC
CGTTCACCAA TACGCATTGA AGCCATTCCG CTAGACGATC CTGCTTCGTT CCGATTACTG
CAACGTTATG AAACCACCGC GGTATTCCAG CTCGAATCCC GCGGTATGAA GGACTTGATT
AAACGCCTGC AGCCCGACTG CTTCGAAGAT ATGATCGCTC TGGTGGCACT TTTCCGCCCA
GGGCCTCTGC AATCGGGCAT GGTGGATAAC TTTATCGAGC GTAAGCATGG CCGTGAAGAG
GTGTCTTACC CCGATTCCCA ATACCAGCAT GAATCCTTAA AGGAACTACT CTCGCCCACC
TACGGCATTA TTTTGTACCA AGAGCAGGTG ATGCAGATTG CACAGGTATT GTCGGGTTAT
ACCTTAGGCG GCGCCGACAT GCTGCGCCGT GCTATGGGTA AGAAAAAACC TGAGGAGATG
GCCAAGCAGC GGAGTATTTT TAAAGAGGGC GCGATTAAAA ACGGTGTCGA TGGTGAGCTG
TCGATGAAAA TCTTCGACCT CGTGGAAAAG TTCGCCGGTT ACGGTTTTAA CAAATCTCAC
TCCGCGGCTT ATGCGTTAGT TTCCTATCAA ACCCTGTGGC TGAAGACCCA TTTTCCACCG
CAATTTATGG CAGCGGTGAT GTCTGCCGAT ATGGATAACA CCGATAAAAT TGTGACCTTA
GTGGATGAGT GTGAGCGGAT GGGGCTCACC ATCATTCCGC CGGATGTGAA TAAGGGATTA
TTTAAGTTTA CCGTTGATGA TGATCTGCGG ATTGTCTACG GCATCGGCGC CATCAAGGGC
GTGGGTGAGG GGCCAGTTGA GTCGATTTTA GAGGCGCGTA AGGACGGTCC CTTTACAGAT
TTATTCGACT TTTGTGCCCG TATTGATCTT AAAAAGCTTA ACAAGCGGGT GATTGAAAAG
CTTATTTGCG CCGGCGCCTT AGATGCGCTT GGACCACACC GCGCCTCGAT GATGGCAACC
TTGCCTGAGG CGATAAGCGC TGCCGATCAG CACGCTAAGG CCGAGGCGAT TGGCCAGCAT
GATATGTTTG GTCTGCTTAA TAGCGATCCC GAGGACAGCA AGCAGCAGTT TGTTGAATGT
ACTCCGTGGC CGGATAAAAT TTGGCTCGAA GGTGAGCGCG AAACCTTAGG GTTGTATTTA
ACGGGCCATC CCATAAATCA ATACCTTAAA GAGCTTAAGC ATTATACTTC TGGGCGGCTC
AAGGATGTGC ATCCCACTGA TCGCGGTAAA ACCGTGAAGG CGGCGGGGTT AGTGGTGGCG
ACCCGCGTGA TGCTCACCAA ACGCGGCTCG AAAATGGGCT TGTTGACCTT AGATGACAAG
AGCGCTCGGC TCGAGGTGAT GCTATTTACC GAAGCCTTTG AGAAGTTTAA TCACCTGCTT
GAAAAGGACC GGATCCTTAT CTGCGAAGGT GAGGTGAGTT TCGATGATTT TGCCGGTGGC
AACCGGATGA CGGCGCGCAA TATTATTGAT ATTAGTGAGG CGCGTAGCCA TTTTGCCAGT
GCATTGGAGA TTGATTTAGA GGCATCGCAG TTGACTCCGA GTATGCTCGA TAGCATCGAG
CAGGCGATAA GTCCATGGCG TAATGGCGCT GTGCCAGTAC TGATTAACTA CAGTCAAGCT
CAGGCCAAGG GGCAGTTTAG ATTGGCTGAA GCCTGGCGAG TTAACCCAAG TGATGAGTTG
GTCTTTGCCT TGGAAAGTTT ACTTGGCCCC CATAAAGTGC GGATTGTATT TCCATAG
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| Protein sequence | MSDPRFVHLR VHSDFSMSDG VAKVKPILAQ VEAKGMAAVA LTDQNNLCGL VKFYGGCHGA
GIKPIIGADF WMQVPGFEDE FCAVTIIAMD NEGYQNLTQI ISQAYLRGQV QGRVVIDQEW
LITYNPGILL LSGGKEGDIG KALLKGNNTQ VESLCEFYQQ HFEGRYFLEL LRTGRPDEER
YLHMAVGVAQ EKGIPVVATN QVVFLKPEDF EAHEIRVAIH DGFTLADPRR PKKYSEQQYL
RSEDEMCELF ADIPAALANT VEIAKRCNVT IRLNEYFLPN FPTGDMSIED FLVDCSKKGL
EERLAFLFPD PQVRAERRGE YDERLDVELK VINQMGFPGY FLIVMEFIQW GKDNGIPVGP
GRGSGAGSLV AYALKITDLD PLEFDLLFER FLNPERVSMP DFDVDFCMDR RDEVIDHVAE
LYGREAVSQI ITFGTMAAKA VIRDVGRVLG HPYGFVDRIS KLIPPEPGMT LAKAFEVEPA
LQESYDADED VKDLIDMCRK LEGVTRNAGK HAGGVVIAPT KITDFSPLYC DAEGKNPVTQ
FDKNDVETAG LVKFDFLGLR TLTIVDWALE MINKVEVKNG RSPIRIEAIP LDDPASFRLL
QRYETTAVFQ LESRGMKDLI KRLQPDCFED MIALVALFRP GPLQSGMVDN FIERKHGREE
VSYPDSQYQH ESLKELLSPT YGIILYQEQV MQIAQVLSGY TLGGADMLRR AMGKKKPEEM
AKQRSIFKEG AIKNGVDGEL SMKIFDLVEK FAGYGFNKSH SAAYALVSYQ TLWLKTHFPP
QFMAAVMSAD MDNTDKIVTL VDECERMGLT IIPPDVNKGL FKFTVDDDLR IVYGIGAIKG
VGEGPVESIL EARKDGPFTD LFDFCARIDL KKLNKRVIEK LICAGALDAL GPHRASMMAT
LPEAISAADQ HAKAEAIGQH DMFGLLNSDP EDSKQQFVEC TPWPDKIWLE GERETLGLYL
TGHPINQYLK ELKHYTSGRL KDVHPTDRGK TVKAAGLVVA TRVMLTKRGS KMGLLTLDDK
SARLEVMLFT EAFEKFNHLL EKDRILICEG EVSFDDFAGG NRMTARNIID ISEARSHFAS
ALEIDLEASQ LTPSMLDSIE QAISPWRNGA VPVLINYSQA QAKGQFRLAE AWRVNPSDEL
VFALESLLGP HKVRIVFP
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