Gene SO_1643 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_1643 
SymbolrnhB 
ID1169437 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp1725561 
End bp1726190 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content51% 
IMG OID637343551 
Productribonuclease HII 
Protein accessionNP_717254 
Protein GI24373211 
COG category[L] Replication, recombination and repair 
COG ID[COG0164] Ribonuclease HII 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGGTAT TTAAGACGCT GACTGACGCC GATATCGCCA TGTTCTCAAC CAGTTTGGTA 
GCCGGGGTGG ATGAAGTCGG CCGCGGCCCC CTCGTTGGCG ATGTGGTTAC AGCAGCGGTG 
ATCCTCGACC CTAATCGACC TATTTTGGGC TTAAATGATT CCAAAAAACT GACCGAAAAG 
CGCCGTGAGG CCTTGTTTGA TGAGATTTGT GAAAAAGCCT TAAGTTTTCA TGTGGGGCGG 
GCCAGTCCTG CGGAAATTGA TGAGCTCAAT ATTCTGCATG CTACCATGCT TGCCATGCAG 
CGAGCAGTGT CAGGGCTTAA GCTCACTCCA GCGTTAGTCT TGGTCGATGG CAATCGCAGT 
CCGGCGTTTA CTCACCAAGG GCTGTCTTTG GCGAGCCATA GCATAATCAA AGGTGATGGC 
TTGATTGCCA GCATTAGTGC GGCATCGATT ATTGCCAAAG TGACACGCGA TCGGGAGATG 
GATGCCCTTG ATGCCGCCTA TCCTCAATAT GGTTTTGCCA AGCATAAAGG CTATCCCACA 
AAGGCGCATT TTGAGGCCAT CGCCGAGCAT GGCGTGTTCG ACCAGTACCG TAAAAGTTTC 
AAACCCGTCA AGGCATTACT GGAGCGTTAA
 
Protein sequence
MAVFKTLTDA DIAMFSTSLV AGVDEVGRGP LVGDVVTAAV ILDPNRPILG LNDSKKLTEK 
RREALFDEIC EKALSFHVGR ASPAEIDELN ILHATMLAMQ RAVSGLKLTP ALVLVDGNRS 
PAFTHQGLSL ASHSIIKGDG LIASISAASI IAKVTRDREM DALDAAYPQY GFAKHKGYPT 
KAHFEAIAEH GVFDQYRKSF KPVKALLER