| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1625 |
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| Symbol | dapD |
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| ID | 1169420 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 1706796 |
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| End bp | 1707620 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637343534 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | NP_717236 |
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| Protein GI | 24373193 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGGCTT TACGCCAACG TATTGAGGCC GCTTTTGAAG CGCGTACCGA CATCACACCA
AGCACTGTTG ACGAGCGCGT GCGTAGCGAT GTGCAACATG TCATCAATAT GCTCGACAAA
GGTGAACTGC GCGTCGCTGA AAAAATCGAC GGCCTATGGC ATGTTCATCA ATGGTTGAAA
AAGGCGGTAT TACTGTCATT CCGTATTTTT GATAACGCTG TTATTGATGG CGCCGAAACC
AAGTATTTTG ACAAAGTGCC GTTAAAGTTC GCCGAATATG ATGAGGCCCG CTTTAAAGCC
GAAGCCATCC GCGTGGTGCC TTCAGCCACT GTTCGTAAAG GCTCGTTCAT CGGTAAAAAC
ACCGTATTAA TGCCATCTTA CGTCAACCTA GGCGCTTATG TTGACGAAGG AACCATGGTC
GACACTTGGG CGACTGTGGG ATCATGCGCG CAAATTGGCA AAAACGTGCA TTTATCGGGT
GGTGTAGGCA TTGGTGGCGT ACTGGAGCCA CTGCAAGCAG GACCAACCAT TATTGAAGAT
AACTGCTTTA TCGGTGCGCG CTCTGAAATT GTCGAAGGCG TCGTGGTTGA AGAAGGCTCA
GTGATTTCCA TGGGTGTGTA TATCGGCCAA AGTACCCGAA TCTATGACCG TGAAACCGGT
GAAGTCCATT ATGGCCGCGT GCCAGCAGGT TCTGTAGTCG TATCAGGTAA CCTGCCCTCA
GCTTGCGGTA AATACAGCCT CTATGCTGCG ATTATCGTGA AAAAAGTGGA TGCGAAAACC
CGTAGCAAAG TCGGTATCAA CGAACTGTTA CGTATCGTCG ATTAA
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| Protein sequence | MEALRQRIEA AFEARTDITP STVDERVRSD VQHVINMLDK GELRVAEKID GLWHVHQWLK
KAVLLSFRIF DNAVIDGAET KYFDKVPLKF AEYDEARFKA EAIRVVPSAT VRKGSFIGKN
TVLMPSYVNL GAYVDEGTMV DTWATVGSCA QIGKNVHLSG GVGIGGVLEP LQAGPTIIED
NCFIGARSEI VEGVVVEEGS VISMGVYIGQ STRIYDRETG EVHYGRVPAG SVVVSGNLPS
ACGKYSLYAA IIVKKVDAKT RSKVGINELL RIVD
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