Gene SO_1557 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_1557 
Symbol 
ID1169363 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand
Start bp1633333 
End bp1634298 
Gene Length966 bp 
Protein Length321 aa 
Translation table11 
GC content42% 
IMG OID637343479 
Productouter membrane porin, putative 
Protein accessionNP_717170 
Protein GI24373127 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGTTT TTTGTAAAAC TCTACTTGCT TCTGCGCTAG CTTCTGCAAC TCTGGCTTCT 
GCTTATGCCG CTGAGCCACT GACTGTTTAT GGTAAGTTGA ATGTTACCGC TCAATCAAAC
GATGAGAACG GTGACGCTAC AACAACTATT CAAAGTAATG CTTCTCGTTT TGGTGTGAAA
GGTGATTTCG AATTATCAAG CTCACTTAGC GCTTTCTATA CTGTTGAGTA TCAAGTCGAT
ACGGGTGCTG CATCGAGCGA TAACTTTACT GCTCGTAATC AATTTGTTGG TTTAAAAGGC
GACTTTGGTT CGTTCTCTGT GGGTCGTAAC GACACGTTAT TAAAGATCTC TCAAGGTGAC
GTTGATCAAT TTAACGACCT TTCTGGCGAC TTAGGTAAAT TGTTTAAAGG TGAAGTGCGT
GCTGCGCAAA CGGCAACCTA CCTAACCCCT TCCTTTGGTG ACTTTGTGTT TGGTGTCACT
TATGTTGCGG AAGGTAATGA TGTAAAAAGT CAATTTGCTC AAGATGGTTT CAGTGTTGCC
GCCATGTATG GTGACGCTAA GTTAAAGAAA ACAGCGGTTT ATGCAGCCCT TGCCTACGAT
TCAGATGTGT CAGGATATGA AGTTTTGCGC GCTAGCTTAC AGGCTAAGTT GGCGGGTATT
AAGTTAGGTG GTATGTATCA GCAACAGGAA CAGACATATA AGCTTGATAA AACAACCTCT
CTGCCTGTTG AAGTCACTGC AGAAAGTGCA ACCGGTTACT TATTAAGTGC AGCTTATGAT
ATTAACGCTG TGACTTTAAA AGCTCAATTC CAAGACATGG AAGACTTAGG TGATTCATGG
TCAGTGGGTG CGGATTACAA CTTAGGCAAG CCGACTAAAG TGTTTGCTTT CTACACCAAC
CGCTCTTTAG AAGCGAATAC AGATGATGAT AAATACATCG CTATTGGTTT AGAGCACAAG
TTCTAA
 
Protein sequence
MNVFCKTLLA SALASATLAS AYAAEPLTVY GKLNVTAQSN DENGDATTTI QSNASRFGVK 
GDFELSSSLS AFYTVEYQVD TGAASSDNFT ARNQFVGLKG DFGSFSVGRN DTLLKISQGD
VDQFNDLSGD LGKLFKGEVR AAQTATYLTP SFGDFVFGVT YVAEGNDVKS QFAQDGFSVA
AMYGDAKLKK TAVYAALAYD SDVSGYEVLR ASLQAKLAGI KLGGMYQQQE QTYKLDKTTS
LPVEVTAESA TGYLLSAAYD INAVTLKAQF QDMEDLGDSW SVGADYNLGK PTKVFAFYTN
RSLEANTDDD KYIAIGLEHK F