Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_1557 |
Symbol | |
ID | 1169363 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 1633333 |
End bp | 1634298 |
Gene Length | 966 bp |
Protein Length | 321 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 637343479 |
Product | outer membrane porin, putative |
Protein accession | NP_717170 |
Protein GI | 24373127 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACGTTT TTTGTAAAAC TCTACTTGCT TCTGCGCTAG CTTCTGCAAC TCTGGCTTCT GCTTATGCCG CTGAGCCACT GACTGTTTAT GGTAAGTTGA ATGTTACCGC TCAATCAAAC GATGAGAACG GTGACGCTAC AACAACTATT CAAAGTAATG CTTCTCGTTT TGGTGTGAAA GGTGATTTCG AATTATCAAG CTCACTTAGC GCTTTCTATA CTGTTGAGTA TCAAGTCGAT ACGGGTGCTG CATCGAGCGA TAACTTTACT GCTCGTAATC AATTTGTTGG TTTAAAAGGC GACTTTGGTT CGTTCTCTGT GGGTCGTAAC GACACGTTAT TAAAGATCTC TCAAGGTGAC GTTGATCAAT TTAACGACCT TTCTGGCGAC TTAGGTAAAT TGTTTAAAGG TGAAGTGCGT GCTGCGCAAA CGGCAACCTA CCTAACCCCT TCCTTTGGTG ACTTTGTGTT TGGTGTCACT TATGTTGCGG AAGGTAATGA TGTAAAAAGT CAATTTGCTC AAGATGGTTT CAGTGTTGCC GCCATGTATG GTGACGCTAA GTTAAAGAAA ACAGCGGTTT ATGCAGCCCT TGCCTACGAT TCAGATGTGT CAGGATATGA AGTTTTGCGC GCTAGCTTAC AGGCTAAGTT GGCGGGTATT AAGTTAGGTG GTATGTATCA GCAACAGGAA CAGACATATA AGCTTGATAA AACAACCTCT CTGCCTGTTG AAGTCACTGC AGAAAGTGCA ACCGGTTACT TATTAAGTGC AGCTTATGAT ATTAACGCTG TGACTTTAAA AGCTCAATTC CAAGACATGG AAGACTTAGG TGATTCATGG TCAGTGGGTG CGGATTACAA CTTAGGCAAG CCGACTAAAG TGTTTGCTTT CTACACCAAC CGCTCTTTAG AAGCGAATAC AGATGATGAT AAATACATCG CTATTGGTTT AGAGCACAAG TTCTAA
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Protein sequence | MNVFCKTLLA SALASATLAS AYAAEPLTVY GKLNVTAQSN DENGDATTTI QSNASRFGVK GDFELSSSLS AFYTVEYQVD TGAASSDNFT ARNQFVGLKG DFGSFSVGRN DTLLKISQGD VDQFNDLSGD LGKLFKGEVR AAQTATYLTP SFGDFVFGVT YVAEGNDVKS QFAQDGFSVA AMYGDAKLKK TAVYAALAYD SDVSGYEVLR ASLQAKLAGI KLGGMYQQQE QTYKLDKTTS LPVEVTAESA TGYLLSAAYD INAVTLKAQF QDMEDLGDSW SVGADYNLGK PTKVFAFYTN RSLEANTDDD KYIAIGLEHK F
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