Gene SO_1525 details

Gene Information

• Locus tag: SO_1525
• Symbol: dxs
• ID: 1169334
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 1601183
• End bp: 1603051
• Gene Length: 1869 bp
• Protein Length: 622 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 637343454
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: NP_717142
• Protein GI: 24373099
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTTTGG ACATTTCTCA GTTTCCAGTG TTGGCACAGG CCAACACACC TAATGAACTC 
CGCCAGCTTC CACAGGCCCT ATTACCCCAA TTGGCCGACG AGTTGCGGGA GTTTCTTCTT 
AAGTCCGTTG GCATGTCCAG CGGACATTTT GCCTCTGGAT TAGGCACAGT CGAACTGACT 
GTCGCCCTGC ATTATGTTTA CAACACCCCG TTTGACCGTT TGATTTGGGA TGTTGGCCAC 
CAGGCCTATC CCCATAAAAT CCTCACTGGT CGCCGTGATA GAATGCACAC CATTAGGCAA 
AAGAATGGAT TACACCCCTT CCCTTGGCGG GAAGAGAGTG AATACGACAC CTTTAGCGTG 
GGTCACTCTG GCACTTCCAT TAGCGCAGCG TTAGCGATGG CCGTTGCTGC CGAAAAAGAA 
CAGGCAGGGC GTAAAGTCGT TGCCGTAATT GGCGATGGCG CGATGACAGG CGGGATGGTG 
TTTGAGGCAA TGAACCACGC GGGTGATTTG CACAACGACA TGCTAATGGT GCTAAACGAT 
AATGAAATGT CAATTTCAGA AAATGTTGGC GCGCTCAACA ATCACTTAGC ACAACTGATG 
TCAGGCCGCT TCTACACCAC CATTCGAGAA AGCAGCAAAA AAGTGCTCAA AGGTATGCCA 
GTCATCAAAG AAATGGCCAA GCGCACCGAA GAGCATCTCA AAGGCATGGT GGTCCCTGGC 
ACCCTGTTTG AAGAATTAGG CTTTAACTAT ATCGGCCCAA TCGATGGCCA CGATGTCGAT 
GCCTTAGTGG AAACCCTGCG CAATATGCGT AATCTCAAGG GCCCACAAGT ACTGCATATC 
ATGACCAAAA AAGGTCGCGG TTATGAGCCA GCTGAAAAAG ATCCTATCGG TTGGCACGCC 
GTCCCTAAAT TTGACCCATC ACTGTTTAAA AAGCCAGCAA CTAAACCTGG CCTACCAACC 
TTCTCACAGG TATTTGGTAA ATGGTTATGT GATATTGCCG AGCAGGATGA AAAAGTCTTA 
GGGATTACGC CTGCCATGCG TGAAGGTTCA GGCATGGTGG AGTTTTCACA GCGTTTTCCG 
AAACAGTATT TCGATGCCGC CATTGCCGAG CAACATGCGG TGACCTTAGG CGCAGGGTTT 
GCCTGTGAAG GCTATAAACC TGTGGTCGCA ATCTATTCGA CCTTCTTGCA ACGCGGCTAT 
GATCAGCTGA TCCACGATGT GGCATTGCAG CGTTTACCCG TACTATTTGC GATTGATCGT 
GGCGGTATCG TCGGTGCCGA CGGCCCTACC CACCAAGGGG CGTTCGATTT AAGCTTTATG 
CGCTGTATTC CAAATATGGT GATAATGGCG CCATCGGATG AAAATGAATG TCGTCAGATG 
CTGTATACTG GTTATTGCTA TGATGCAGGC CCAAGCGCGG TGCGTTACCC AAGGGGCAGC 
GCCACTGGCG CGACTCAGGT AGAAGCCATG ACGGCGCTGC CGATTGGTAA AGGGGTGATT 
AAGCGTTTAG GCAAACGCAT CGCACTGCTT AACTTCGGTA CCACCTTGGC CGCAGCCCTC 
ACTGCAGCAG AGAGTTTAGA TGCGACAGTG GTTGACATGC GCTTTGTGAA GCCGCTGGAT 
GTGGATTTAG TCAAAGAGAT GGCGCAAACC CATGATGTGC TAGTCACAGT GGAAGAAAAC 
GCTATTATGG GCGGCGCAGG CTCTGGCGTA TTAGAGCTGT TACAACAGCT TAAAATGCCT 
AAACCTGTAC TGCAAATTGG CCTGCCCGAT GAGTTTATTA AACATGGCTC GCCAGATGAA 
GTGATCCATG ACTTACAACT CGATGCCGAA GGCATGTTAG CGCAGATTAA TGCCTATCTC 
GCCAATTAA 

 

Protein sequence

MSLDISQFPV LAQANTPNEL RQLPQALLPQ LADELREFLL KSVGMSSGHF ASGLGTVELT 
VALHYVYNTP FDRLIWDVGH QAYPHKILTG RRDRMHTIRQ KNGLHPFPWR EESEYDTFSV 
GHSGTSISAA LAMAVAAEKE QAGRKVVAVI GDGAMTGGMV FEAMNHAGDL HNDMLMVLND 
NEMSISENVG ALNNHLAQLM SGRFYTTIRE SSKKVLKGMP VIKEMAKRTE EHLKGMVVPG 
TLFEELGFNY IGPIDGHDVD ALVETLRNMR NLKGPQVLHI MTKKGRGYEP AEKDPIGWHA 
VPKFDPSLFK KPATKPGLPT FSQVFGKWLC DIAEQDEKVL GITPAMREGS GMVEFSQRFP 
KQYFDAAIAE QHAVTLGAGF ACEGYKPVVA IYSTFLQRGY DQLIHDVALQ RLPVLFAIDR 
GGIVGADGPT HQGAFDLSFM RCIPNMVIMA PSDENECRQM LYTGYCYDAG PSAVRYPRGS 
ATGATQVEAM TALPIGKGVI KRLGKRIALL NFGTTLAAAL TAAESLDATV VDMRFVKPLD 
VDLVKEMAQT HDVLVTVEEN AIMGGAGSGV LELLQQLKMP KPVLQIGLPD EFIKHGSPDE 
VIHDLQLDAE GMLAQINAYL AN