| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1500 |
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| Symbol | |
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| ID | 1169310 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 1570452 |
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| End bp | 1573448 |
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| Gene Length | 2997 bp |
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| Protein Length | 998 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637343430 |
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| Product | sensory box protein |
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| Protein accession | NP_717117 |
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| Protein GI | 24373074 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCAAAATG CGGCTTTATT GCTGGCGCTG GTATTTTTGT ATGATGCGAT TCCTAAAAAG
CATCAGCGGC AGTATTTTTT ACTCTGGCGG CTGGGAATTG GCGTACTCAT AGGTGGCATT
GGTGTCGCGA TTATGAGTAC ACCATGGATG TATGAACCTG GGATTATTTT CGATACCCGC
TCAGTGCTTT TATGTGTTTC AGGTTTATTT TTTGGCGGTT TGCCAACGGC AATCGCCGTG
GTTATCACTG CGCTTTATCG GCTGAGTATT GGTGGTGTTG CCATGTGGGT TGGGGTTGGA
GTGATTATTA CCTCTGGCCT TATTGGCGTG ATATGGCGGC ATTATCGTAA GGCCCACCTC
GCGAGTATTT CGGGCACAGA AGTGATTAGT TTTGCTTTCT TAGTGCATTT AGTCATGTTG
TCATGGTTTT TTCTATTGCC TGGCCAACAT GTAGTACCTG TTCTGTCTAA AATCACCTTA
CCTATATTAT TGATTTATCC CCTCGCAACA TGGTTGTTGA GTCGTTTACT GTCCCGCCGC
TTTGAATTGG AGCGAGATGA ACAAATCCGT TTGCAAGATG ATTTCTTGTT CCGTAGCCAA
TTTAACATCG GCAATATTGG GATTGCGATA ACGGGTATTG ATCAAAAGTG GATTAAAGTG
AATCCAAGGC TTTGCCAGAT GCTGAAGTAC TCAGAAGATG AGTTGTTGCA TATGACCTGG
AAGCAGCTCA CTCACCCAGA TGATCTCGAC GCTGATGTTG CCAAATTTGA GCAGATGCTT
GCCGGTAATA TTGATAATTA TGAATTGGAT AAACGCTTTA TCGCGAAGAA TGGCTCACTG
GTTTACACCC ATATGACGGT GGCCTGTAAG CGTACGAATC ATCAGGTATT ACTGGTGATT
TCGGGGTATT TGGATGTAAC AGCCCAAACC CTTGCCGATA GAGAAGTGCT TGCCAGTCGT
GAACAGCTCG AATTGGTATT AAGCAGCAGC GATCTCGGGG TATGGGACTG GGACATTCGT
AATGATCATA TTGAGCGCAA TACCCGCAGC GCCGATATTT TAGGGTGCGA TATCGACATG
CTTAATGCCA ATAGTCGGCA GTGGATGGAC TCGATCGTTG CTGAAGATCG ACCTCAAGTG
CTGCAATCAA TTGAAGCCCA CATCCGCGGA GAAACGCCGC AGCATAAGAT GGAATACCGC
TTAAAAACCC TCAACCGTGA TATTCGCTGG ATATTAGATA CGGGCAAGGT AGTGAGTCGC
GATGCCAACA ATAATGCCCT AAGAATGTGC GGTACTTATA CCGATATCAC CGAAGCTAAG
TTGATTGAAG AGTCCTTAAA ACTCTCGGCA TTGGTGTATG ACAATAGCTC AGAAGCCATG
AGCGTGCTCG ATGAAAATGG TGTGATTATT ACCGTAAACG CCGCCTTTAC TGATATTACC
GGTTATAGCG AGTCTGAAAT CCGTGGGCAG CATATTCGTA TGATGTATTG CGACCTCAAT
GGCCATGAGT TTTATCAGCA GATGAATGAT GATATCCGCA ATAAAGGCGA GTGGCAGGGT
GAGATGCGCC AACGGCGCAG AAACAATGAA GAATATGTGA TTTGGTTAAC CATCAACACC
ATCAAAGATA AAGATGGTTT ACCGCACCGC CGTGTTGCAC TCTTTTCCGA TATTACCGAT
AAAAAACAAA GTGAACATTT AATCTGGAAG CAGGCAAACT ACGATACCTT AACCGGCTTA
CCTAACAGGC GCATGTTGCT CGAATATTTA AGTGCCGAAA TCAAGACGGC CGACCGCAAC
CGTAATCACT TTGCGTTGAT GTTTCTCGAC CTCGATTACT TTAAAGAGGT TAACGATACC
CTAGGTCATG CCATGGGGGA TTTATTACTG ATTGAAACCG CAAGCCGCTT AAAATCCTGT
GTACGGGACG CTGATGTGGT AGCGCGACTT GGCGGTGATG AATTTACCGT GGTGCTCAGT
TCAATGGCGG ATCATAAGGG GATTGAGCGA GTTGCTGAGC ATATTTTAAG GCGTATTGCC
GAGCCCTATT ACTTAGGTGA AGAAACCACC CATATCAGCG CGAGTATTGG GATCACGCTT
TATCCGGACG ATTCGCCCAG CATTGAGGGC TTGCTAAAAC ATGCGGATCA AGCCATGTAT
GCGGCAAAAG ATCAGGGGCG CAACCGGTTT AACTACTTTA CGCCTTCGAT GCAGGAATAC
GCAAAATATC GCATGCGATT AATCCACGAT CTCCGTCAAG CGGTGCTTAA TAAAGAATTT
GAGCTGCACT ATCAACCGAT AGTGACCATG GCGACTGGTG AAGTGCTTAA AGCTGAAGCC
TTGTTACGCT GGTTCCATCC GGAGCGGGGC TCGGTGTCGC CGGCGGAGTT TATTCCCGTC
GCTGAAGATA CTGGGCTAAT TGTTGAGATT GGTAATTGGG TATTTGAACA GGCCGCGCGC
CAAAGTGCCC AGTGGCGCAA GACACTCGGC GTTGAAATTC AGATCAGTGT TAACAAATCG
CCCATTCAGT TCCGTGATGA GGGGGCATTG TTACACAATT GGCTCGAGTT ACTGCAACAG
CTTGATGTCA CGGGGGCGGG CGTTTGTGTG GAAATTACCG AGGGGCTATT GCTTGATGCC
AGCATGGGGG TGACCGAAAA ACTGTTAGCC TACAGGGATG CGGGCGTACA AGTATCTTTA
GATGATTTTG GTACCGGCTA TTCATCACTG GCGTATTTGA AGAAATTCGA TATCGACTAT
TTAAAAATAG ATCAATCTTT TACTCGCAAT ATTGATACGG ATGAAAACGA TCACACCTTG
TGTGAAGCCA TTATTGTGAT GGCCCATAAA TTGGGCATGA AAGTCATCGC CGAAGGGGTT
GAGACTGAGG CGCAGCGGCA GGTATTGCTC AGGGCTGGCT GTGATTATGG CCAAGGCTAT
TTATTCTCTA AACCGGTGAG TGCCAGTGAG TTTGCCAGCA AGTATTTGCT GACCTAA
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| Protein sequence | MQNAALLLAL VFLYDAIPKK HQRQYFLLWR LGIGVLIGGI GVAIMSTPWM YEPGIIFDTR
SVLLCVSGLF FGGLPTAIAV VITALYRLSI GGVAMWVGVG VIITSGLIGV IWRHYRKAHL
ASISGTEVIS FAFLVHLVML SWFFLLPGQH VVPVLSKITL PILLIYPLAT WLLSRLLSRR
FELERDEQIR LQDDFLFRSQ FNIGNIGIAI TGIDQKWIKV NPRLCQMLKY SEDELLHMTW
KQLTHPDDLD ADVAKFEQML AGNIDNYELD KRFIAKNGSL VYTHMTVACK RTNHQVLLVI
SGYLDVTAQT LADREVLASR EQLELVLSSS DLGVWDWDIR NDHIERNTRS ADILGCDIDM
LNANSRQWMD SIVAEDRPQV LQSIEAHIRG ETPQHKMEYR LKTLNRDIRW ILDTGKVVSR
DANNNALRMC GTYTDITEAK LIEESLKLSA LVYDNSSEAM SVLDENGVII TVNAAFTDIT
GYSESEIRGQ HIRMMYCDLN GHEFYQQMND DIRNKGEWQG EMRQRRRNNE EYVIWLTINT
IKDKDGLPHR RVALFSDITD KKQSEHLIWK QANYDTLTGL PNRRMLLEYL SAEIKTADRN
RNHFALMFLD LDYFKEVNDT LGHAMGDLLL IETASRLKSC VRDADVVARL GGDEFTVVLS
SMADHKGIER VAEHILRRIA EPYYLGEETT HISASIGITL YPDDSPSIEG LLKHADQAMY
AAKDQGRNRF NYFTPSMQEY AKYRMRLIHD LRQAVLNKEF ELHYQPIVTM ATGEVLKAEA
LLRWFHPERG SVSPAEFIPV AEDTGLIVEI GNWVFEQAAR QSAQWRKTLG VEIQISVNKS
PIQFRDEGAL LHNWLELLQQ LDVTGAGVCV EITEGLLLDA SMGVTEKLLA YRDAGVQVSL
DDFGTGYSSL AYLKKFDIDY LKIDQSFTRN IDTDENDHTL CEAIIVMAHK LGMKVIAEGV
ETEAQRQVLL RAGCDYGQGY LFSKPVSASE FASKYLLT
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