| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1496 |
|---|
| Symbol | |
|---|
| ID | 1169307 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 1564763 |
|---|
| End bp | 1567276 |
|---|
| Gene Length | 2514 bp |
|---|
| Protein Length | 837 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637343427 |
|---|
| Product | glycogen phosphorylase family protein |
|---|
| Protein accession | NP_717113 |
|---|
| Protein GI | 24373070 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0058] Glucan phosphorylase |
|---|
| TIGRFAM ID | [TIGR02093] glycogen/starch/alpha-glucan phosphorylases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCACG ACAGTGAGTT GAGCCCAAAT ACCAGCGGCG TTACCCCTAA AAAACGTGCA
ACGATAGCTG TTGAGAGTCT AAAAGCAGTT GCCCACGACC CCTGTGAACC CTGTGATGCT
TTGCCAGCTT CTTTTACTCG CCATGTGCGT TACGGATTAA GTCGTGGAGA AGGCGCCAGA
GGAGAGTTAT TTCAGGCACT TGCCCTCAGC GTTAAAGAGC AAATGCTGGA CGATTGGCGT
GAGACACGCA TAAAAGATAG CCATTATGAC AACAAGCAAG TTGCTTATTT GTCACTCGAA
TTTTTAATGG GCAGGACACT AGGTAATGCC TTGTTAAGCT TAGATTTAGA GCAAGATAGC
CGTGAAGCTT TAAGTCATTA CTCGGTTTCT CTTGAGGAGC TTGAAGAGGC CGAACATGAT
GCGGGGTTAG GCAATGGTGG CTTAGGACGA CTCGCGGCTT GCTTTCTCGA CAGTTGCGCA
AGCCTAGATT TATCCGTCAC TGGCTATGGT ATTCGTTACG AATACGGCAT GTTTGCCCAG
AAAATTGTTG ATGGTTATCA GGTCGAGCGC CCAGATCGCT GGTTACGTGA GGGTAATCCT
TGGGAGGTAC GCGTTCCCCA TCATAATGTG ACAGTGCATT TTTTTGGCCA CACCGAATCC
TATGTAGATA AGCAAGGGCG CAGACACGTG ATTTGGGTTG ATACCCAAGA TGTACTCGCC
GTGGCCTACG ATATGCCTGT GCCCGGTTAT CGCAATGGTC GTATCAATAC CCTAAGACTT
TGGAAGGCTG AAGCCACCGA TGACTTTGAT TTAGCAGAGT TTAACCAAGG GGATTATACC
GAGGCTGTGG CGCGTAAAAA CCTCGCCGAA CAGATCACTA TGGTGCTGTA TCCCAATGAT
GCCAGTGAGA ACGGTAAGGA ACTGCGCCTT CGTCAGCAGT ATTTTTTGTC CTCCGCCAGT
TTGCAGGCGA TTTTGAAACG TTGGGTGCAT CACCACGGCC ATGACTTCAC TCAGTTTGCA
GCAAAAAATG TGATGCAGTT GAATGACACT CACCCGAGCA TCGCCGTACC TGAGTTAATG
CGTTTACTGG TGGATGAATA CGCCCTCGAG TGGGATGCCG CTTGGGCGAT AACCCGTCAA
ACTATGGCTT ACACCAATCA TACGCTGTTA CCCGAAGCAT TAGAGCGTTG GCCTGTGCGC
ATGATGGCGC TGATGTTGCC GCGGATTTTA GAAATCATCT ATGAGATCAA CGCAAGATAT
CTTGATTTAG TCGCCCACCA CTGGCCAGGG GATGCTGACA AGCTTGCGAG CATGTCGATT
ATTCAAGAAG GCCCCGATCC ACACGTTAGG ATGGCTTACT TAGCCATAGT GGCAAGCTTT
TCGGTGAACG GCGTTGCAGG ACTGCATACT CAGTTATTAA AGTCGGGTCT GTTTAAGGAT
TTTTATAGCC TCTGGCCGCA GAAGTTTAAC AATCGTACCA ACGGAGTCAC GCCAAGGCGT
TGGTTAGCTC ATTGCAATCC TGCGCTCGCC AAACTGTTAA GTAGCCATTT GGGTCAGAGT
TGGGTAACGG ATTTAAGCCA GCTTATGGCG CTCAATGCCC TAACCCAAGA TGCCAGTTTT
ATTCAACAGT GGCGAGAGGT GAAGCAAGGC AACAAGGTAT TGCTGGCAAA TATGATCGCC
AAGGAATGTG GCGTCGAGTT TGACCCTTCT ATGCTGTTTG ATGTGCAGGT GAAACGGATC
CACGAGTACA AACGTCAGCT ACTCAATATT CTGCATGTGA TCCATCTTTA TCATCAAATT
CAACAGGGGC ATACAGAGCA TCTGGTGCCA CGCTGCGTGC TGATCGGGGG CAAAGCCGCG
CCCGGTTACT TTATGGCGAA GTTGATTATC AAACTCGCCA GTAATGTCGC CCATATGGTC
AATTCTGATC CTGTGGTGGC GCCTTACCTC AGATTTGCCT TTTTGCCTAA TTACAATGTC
AGTGCCATGG AAAAAATCTG TCCGGGCACC GATGTCTCCG AACAAATCTC CACCGCGGGT
AAGGAGGCCT CTGGCACGGG CAATATGAAG TTTATGATGA ACGGCGCGCT CACCATAGGC
ACCCTAGATG GCGCCAATAT TGAGATGCTT GAAGAAGTGG GCGAAGAGAG TTTTTTCCTC
TTTGGACTCA ATGCTGAGCA AGTCGCTGCT ATGCGCTCAA ATTATCAACC GAAACGCATT
ATCGCGCAGT CCCATGCCTT ATCCGAGGTG ATGGCGCTAC TAAAAAGTGG CCACTTTAAT
CTGCTCGAAC CGGGGATTTT CGATCCCATT ATCACTTCGA TTGAAAGCTC GGATGATCAA
TGGATGACGG CGGCGGATTT CGATAGTTAT CGCCTCGCCC AGGAGGCTGT CGCTAACACC
TACAAAGATC AGCAAAAGTG GACGCAAATG AGCATTCGCA ACACGGCGGC CAGCGGCCGC
TTCTCCAGCG ATGTGACGAT TGCTGGCTAT CGAGATGAAA TTTGGAAGTT ATAA
|
|---|
| Protein sequence | MSHDSELSPN TSGVTPKKRA TIAVESLKAV AHDPCEPCDA LPASFTRHVR YGLSRGEGAR
GELFQALALS VKEQMLDDWR ETRIKDSHYD NKQVAYLSLE FLMGRTLGNA LLSLDLEQDS
REALSHYSVS LEELEEAEHD AGLGNGGLGR LAACFLDSCA SLDLSVTGYG IRYEYGMFAQ
KIVDGYQVER PDRWLREGNP WEVRVPHHNV TVHFFGHTES YVDKQGRRHV IWVDTQDVLA
VAYDMPVPGY RNGRINTLRL WKAEATDDFD LAEFNQGDYT EAVARKNLAE QITMVLYPND
ASENGKELRL RQQYFLSSAS LQAILKRWVH HHGHDFTQFA AKNVMQLNDT HPSIAVPELM
RLLVDEYALE WDAAWAITRQ TMAYTNHTLL PEALERWPVR MMALMLPRIL EIIYEINARY
LDLVAHHWPG DADKLASMSI IQEGPDPHVR MAYLAIVASF SVNGVAGLHT QLLKSGLFKD
FYSLWPQKFN NRTNGVTPRR WLAHCNPALA KLLSSHLGQS WVTDLSQLMA LNALTQDASF
IQQWREVKQG NKVLLANMIA KECGVEFDPS MLFDVQVKRI HEYKRQLLNI LHVIHLYHQI
QQGHTEHLVP RCVLIGGKAA PGYFMAKLII KLASNVAHMV NSDPVVAPYL RFAFLPNYNV
SAMEKICPGT DVSEQISTAG KEASGTGNMK FMMNGALTIG TLDGANIEML EEVGEESFFL
FGLNAEQVAA MRSNYQPKRI IAQSHALSEV MALLKSGHFN LLEPGIFDPI ITSIESSDDQ
WMTAADFDSY RLAQEAVANT YKDQQKWTQM SIRNTAASGR FSSDVTIAGY RDEIWKL
|
|---|
| |