| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1495 |
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| Symbol | glgX |
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| ID | 1169306 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 1562508 |
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| End bp | 1564760 |
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| Gene Length | 2253 bp |
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| Protein Length | 750 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637343426 |
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| Product | glycogen operon protein |
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| Protein accession | NP_717112 |
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| Protein GI | 24373069 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGAGTG CTGCGCTTAT CAATTCCGGC GGTTCACTGC CTTATTCCGT AAGCGCGGGT
AAGGCTTTTC CGTTAGGGGC GACGGTCGAT GATGGCGGGG TTAATTTCGC GCTATTTTCG
GCCCATGCCA CAGGGGTGGA ATTGTGTCTC TTCGACGCAC AAGGTAAGGT CGAAATTCAG
CGCATTGCTT TGACGGAGCA AACCCAGCAA ATCTGGCATC TGTATGTACA TGGGCTCTGT
GCAGGCCAGC TTTATGGCTA TCGTGTCTAT GGTCCCTACG AGCCCCAATT AGGCCACAGA
TTTAATCCGC ACAAATTGCT ATTAGACCCC TACGCCCGCC AGCTCGTGGG GCGTTATCAT
CACCATATTG CCAACTTTGG CTATGAGTTA GATAACCCTA ACGAAGACTT ATCTTTTAGT
ACCTTAGATA ACGCCGCTTA TATGCCAAAA TGCAAGGTCG TCGATATTCG ACCACTGCTT
GCTGCGGCCG AATCGCAGGC TATTCGGCCA CTTTCACCCC ATCGAAATCC ACTACCGATT
GAGCAGTGCA TTATTTATGA GATGCACTTA AAAGGCTTTA CCGCGCTGCA CCCTGAGATC
GACGTGCCGC TACGTGGCAC CTTTGCAGGA TTGGCATCGA AGGCTGCGAT AGATTACTTA
GTCAAGCTTG GTGTGAATTG CGTTGAGCTG TTACCGATTC AGGCATTTTT CTCCGAACCC
TTTTTACTTG AAAAACAGCT GTCTAACTAT TGGGGCTACA ACAGTATTGG CTTTTTCGCG
CCAGAACCGA GTTATCTCTC GAGTGAGGAT ATTATTGAGT TTCGCACTAT GGTGGATGCG
CTACATGGCG CGGGCATTGA AGTGATTCTT GATGTGGTCT ACAACCATAG CGCCGAAGGC
AGCCGTCTCG GGCCAACTTT TAGCTTCCGT GGTATCGACA ATCTGAGCTA TTACCGTCTA
CATCCAAACG ATAAACGCTT CTATATCAAT GATACTGGTT GTGGCAATAC CTTAAACCTC
AATCATCCCC GCATGTTGCA GTTGGTGTTG GACTCACTGC GTTATTGGGT GAAGGTCATG
GGCGTTGATG GTTTTCGTTT CGATTTAGCA GCCAGTCTTG GCCGTGAAGC CTATGGGTTT
GATCCCGGCT CCGGCTTTTT TGATGCGCTG CTGCAAGACC CCGTGCTTTG CCGTGTGAAG
TTGATTGCCG AACCTTGGGA TATAGGTCCT GGCGGTTATC AGCTCGGCAA TTTCCCGGTG
GCCTTTAGCG AGTGGAACGA CAGATACCGC GATACGATGC GCCGATTCTG GCGCGGCGAT
CACGGCATGT TACCGGAATT TGCGCGGCGC TTTCATGGCT CAGGGGATTT TTTTGAGCAT
AGTGGCCGCC CGCCCGCTGC CAGTATCAAT TTCTTGACCA GTCACGATGG TTTTACCCTG
AAAGATTTGG TGAGTTACTG CGAGCGGCAC AATTGGGCCA ACGGTGAAGA GAATCGCGAT
GGCCACCATG CGAACTTCAG CTACCACTAC GGAGTGGAAG GGGCGTCCAA CGACGTTTCA
GTGTTAGTGC TACGCGCCCG CCAGCAACGC AATTTACTGA CCACCTTATT TTTGTCCCAA
GGCGTGCCAA TGCTGCTCAG CGGTGATGAA ACGGGCCGCA CTCAAGGCGG AAATAATAAC
GCCTATTGCC AAGATAACCC GATGAATTGG TTTGATTGGT CATCTGAGGG AATGGATAAA
CATCTGCTGA GTTTTACCCA ACAACTTATC GCCTTGCGTA AGCGCTTTCC GCTCTTATGT
GCAAAACGTT TTATCCATGA ACAGCTGGTG GCTCGTTCTC TCGAATCGCC CTCAGAGTCG
CCTTTAGGTG CTGCAAAGTT CTTAACTCAG CCAAGCGCGA GGTTAGATTG GTTTAGTCGA
CAAGGTAAGC CAATGACAAA AAGCCTGTGG AGCGAGTCTA TGTGCCGCAG TCTCTGCGTG
GTGTTATCCG GTGATTTAAC CGCAGGCATT GATGTGGCTG GTGACAACAG CTTTCAAGCC
TTGCTGTTAA TGGTGAATGC CGATGAGCAT CCGTTGGCAT TTACCCCGCC TGTTTTTGAG
CATTTAGGTC CGTGGCAATG CTTGCTACAT ACCCAAACCG AACCGCAATA CCTTACTCCC
ACTGAGCCGC TGGATGCTCA GTCCTCACCA ACACGATACT TACTACAAGA TCGCAGTCTT
ATGCTGTTTC ATGCTGATTT TATAAGGAAT TAA
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| Protein sequence | MTSAALINSG GSLPYSVSAG KAFPLGATVD DGGVNFALFS AHATGVELCL FDAQGKVEIQ
RIALTEQTQQ IWHLYVHGLC AGQLYGYRVY GPYEPQLGHR FNPHKLLLDP YARQLVGRYH
HHIANFGYEL DNPNEDLSFS TLDNAAYMPK CKVVDIRPLL AAAESQAIRP LSPHRNPLPI
EQCIIYEMHL KGFTALHPEI DVPLRGTFAG LASKAAIDYL VKLGVNCVEL LPIQAFFSEP
FLLEKQLSNY WGYNSIGFFA PEPSYLSSED IIEFRTMVDA LHGAGIEVIL DVVYNHSAEG
SRLGPTFSFR GIDNLSYYRL HPNDKRFYIN DTGCGNTLNL NHPRMLQLVL DSLRYWVKVM
GVDGFRFDLA ASLGREAYGF DPGSGFFDAL LQDPVLCRVK LIAEPWDIGP GGYQLGNFPV
AFSEWNDRYR DTMRRFWRGD HGMLPEFARR FHGSGDFFEH SGRPPAASIN FLTSHDGFTL
KDLVSYCERH NWANGEENRD GHHANFSYHY GVEGASNDVS VLVLRARQQR NLLTTLFLSQ
GVPMLLSGDE TGRTQGGNNN AYCQDNPMNW FDWSSEGMDK HLLSFTQQLI ALRKRFPLLC
AKRFIHEQLV ARSLESPSES PLGAAKFLTQ PSARLDWFSR QGKPMTKSLW SESMCRSLCV
VLSGDLTAGI DVAGDNSFQA LLLMVNADEH PLAFTPPVFE HLGPWQCLLH TQTEPQYLTP
TEPLDAQSSP TRYLLQDRSL MLFHADFIRN
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