| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1480 |
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| Symbol | |
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| ID | 1169293 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 1542160 |
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| End bp | 1543950 |
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| Gene Length | 1791 bp |
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| Protein Length | 596 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637343413 |
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| Product | GGDEF family protein |
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| Protein accession | NP_717097 |
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| Protein GI | 24373054 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAGTTTT TTAGTGTTTT CATTTTGGCA ATCTTGAGCA TACTTTGTAT GCCCTTGATT
GCTTCAACTA CAAATTATGA TGAAACGCTA ACTAAGATTG AAACATTACA ACATTCTGAT
TTACCTGCTG CTATAAACCT AATTAAAACA ATTGAATCTG AATTTGGTGC TATGTCTCGC
TTACAGCAGG GACGAGTTTT GCTCTTTAAA GGTGCAGCTT CTATTTATTC AGGACAATAT
CAAACTGCTA TTGAGTTATT GGGCCAAGCA GAAGCCTTAC TCAAAGACTC GGAAATGTTA
TTTTCTGCAT ATAGTTATGA GGCAACAGCC TATATTGCTT TACGTCATTT CAATGATGCA
TTTATTGCAA TGGGAAAGAG TCTTGGTTTA ATCGAACGAA TAGAGGACAC AAATCTTAAA
CGTGCGTCTT ACTTACGTTT AGCTAGCTTG TATTCGGCTA TGGGGATCTC AGAGGAAGTT
GCTACATATG CAACTAAAGC GCTTGCTCTT GCCTCCGAAA GTGATGTTAA AGATATTTGT
GGGGCTAGGC TTTATCTATC AGTACATCAA TTAGAGATAG CGTCGTATGC ACAAGCATTT
GATGAATTTA AGTCTACTCG TAGTTATTGT GAATCCAGTG GTTACCCACT AATTGCGAAT
ATTGCATTAA AAGGTATGGG AGAATCGAGT CTTAGATTGA ATGAGCCACA GCTTGCTATC
TCTTACTTAT TAGATTCTCT AAAGGGGTAT GAATCATTTA ATTTTGAGCT GGAGATTAAT
AGCGTACATG AGTTGCTCAG TGAAGCTTAT TTGTTGTTGC AAGATTCTAC GAAAGCTGAG
TTACATGCTC AATATGTTAT GAATCTTGTG GATGATTCTA GCAATACAGA GCTTAAGCAC
GGTGCATCAG GTGTACTCGC TAAGATTTAT GCTCAAAAAC AGCAATTTGA ACAGGCCTAT
GAATACTCCA GAAAAGAGCA GCATTATAAT CAACTGATTT TTGATGAGTC GAGGATGAAA
ACCCTTGCTT ATCAGGCGGC TAAGTTTAAT GCCGATGAGC AGGCGCGTGA AATCAACTTG
CTGAATAAAG AGCGTGAACT TTACATCGCC CAGCAAATGG TAAAAGAGCG TGAGTACACT
AATATGCTCA TGTTTATCAC CATATTAGTG GGTGGGCTGT TTTTTCTTGC GATTTTGTTA
GTGGTGGGCA ATTTGCAAAA ACGGCGTTTT ATGCGCATGG CCAAAATGGA TGCGCTGACG
GGCGTGCTTA ACCGTGGTGC AGGGCAAGAT CTTGGCGAAA ATATGTTTGT GCAAGCCGCT
GCCCGAGGGG GGGATTATTG CGTGATTTTA TTCGACTTAG ATCATTTTAA ACGGATTAAT
GATTCCTACG GCCATGGCAC GGGTGACTGG GCGCTTAAAA AAGTCGTTGA GGTGTTAAAA
CCTCATATTC GTAATGGCGA TGTATTTGCT CGGATTGGCG GCGAAGAGTT TGCCTTATTT
TTACCCTATG CCAATGAGGC TAAGGGGCTG GACGTTGCCG AACAATGCCG CAGCCGAATA
GAAGCGATTG ATACTCATCT GTCGGGGCAT AAATTTACCA TTACCGCGAG TTTTGGGGTC
AGCGGTATGA CAAAAGATGA TTTAAGCTTA GATCCACTTT TGCACCGTGC TGATATGGCG
CTCTATGCCG CAAAATCGAA TGGTCGTAAC TGCGTATCTT GTTACCAGGA TGCCTTAATG
TGCGATAAGC GAGTCACCAA TCTCACCAGC GAGTTAGCAA GGCAGCCTTA A
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| Protein sequence | MKFFSVFILA ILSILCMPLI ASTTNYDETL TKIETLQHSD LPAAINLIKT IESEFGAMSR
LQQGRVLLFK GAASIYSGQY QTAIELLGQA EALLKDSEML FSAYSYEATA YIALRHFNDA
FIAMGKSLGL IERIEDTNLK RASYLRLASL YSAMGISEEV ATYATKALAL ASESDVKDIC
GARLYLSVHQ LEIASYAQAF DEFKSTRSYC ESSGYPLIAN IALKGMGESS LRLNEPQLAI
SYLLDSLKGY ESFNFELEIN SVHELLSEAY LLLQDSTKAE LHAQYVMNLV DDSSNTELKH
GASGVLAKIY AQKQQFEQAY EYSRKEQHYN QLIFDESRMK TLAYQAAKFN ADEQAREINL
LNKERELYIA QQMVKEREYT NMLMFITILV GGLFFLAILL VVGNLQKRRF MRMAKMDALT
GVLNRGAGQD LGENMFVQAA ARGGDYCVIL FDLDHFKRIN DSYGHGTGDW ALKKVVEVLK
PHIRNGDVFA RIGGEEFALF LPYANEAKGL DVAEQCRSRI EAIDTHLSGH KFTITASFGV
SGMTKDDLSL DPLLHRADMA LYAAKSNGRN CVSCYQDALM CDKRVTNLTS ELARQP
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