Gene SO_1473 details

Gene Information

• Locus tag: SO_1473
• Symbol: smpB
• ID: 1169287
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 1538569
• End bp: 1539060
• Gene Length: 492 bp
• Protein Length: 163 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 637343407
• Product: SsrA-binding protein
• Protein accession: NP_717089
• Protein GI: 24373047
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0691] tmRNA-binding protein
• TIGRFAM ID: [TIGR00086] SsrA-binding protein

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTAAAGA AAAACTCAAA AAAAGCCGCG CCTGCGACAA TCGCACGAAA TAAGCGCGCA 
ACCTTCGAAT ACCGTTTCGA AGAAAAAATG GAAGCTGGCC TGTCCCTCAT GGGGTGGGAA 
GTGAAGTCTA TCCGCATGGG TAAAGTCAAC CTGTCGGATT GCTACGTATT CTTAAAAAAT 
GGTGAAGCCT TTATGCATGG CTGTACCATT ATTCCACTCA ATACCGCTTC AACCCATGTG 
GTCTGCGATC CTATACGACT CAAGAAATTA CTGTTAAGTC GTAAAGAGTT AGACAAATTA 
GCTGGTTTAG TGGAACGCCA AGGCTATTCA ATTATTCCCA TCTCCATGTA CTGGCGCAAA 
GGTGCATGGG TCAAAGTGGA AATCGGCCTA GGTAAAGGTA AAAAAGATCA CGACAAGCGT 
GAAGATACCA AAGCACGCGA ATGGGAAGTC GAAAAAGCCC GCGTAATGAA AAAGGAAAAA 
ACGCGCGGAT AA 

 

Protein sequence

MVKKNSKKAA PATIARNKRA TFEYRFEEKM EAGLSLMGWE VKSIRMGKVN LSDCYVFLKN 
GEAFMHGCTI IPLNTASTHV VCDPIRLKKL LLSRKELDKL AGLVERQGYS IIPISMYWRK 
GAWVKVEIGL GKGKKDHDKR EDTKAREWEV EKARVMKKEK TRG