| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1471 |
|---|
| Symbol | |
|---|
| ID | 1169286 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 1536626 |
|---|
| End bp | 1537873 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637343406 |
|---|
| Product | phage integrase family site specific recombinase |
|---|
| Protein accession | NP_717087 |
|---|
| Protein GI | 24373045 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0582] Integrase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGAC TTACTAAGCC GTTATCTGAT ACAGAAATAA AAACAGCCAA ACCAAAGGAT
AAGGAATACA ACCTTGCCGA TGGTGGCGGA CTACAGATCA GAATTAAGCC TAATGGCTCG
AAGCTCTGGC TACTAAACTA TTCACACCCA ATAACGAAAA AGCGTCAAAA CCTGAGTCTT
GGCACCTATC CAGATATTTC ATTATTATCT GCTCGTAAAC TCGCACAAGA AGCTCGAACT
CTCTTAGCGC ATGGCACAGA CCCTAAAGCC CATAGAGAAG CACAGATTGC CGCTAAAGCA
GCCATCATAG AACATACTTT TGGTAAAATT GCTGCCGAGT GGTTTGAGCG GAAAAAAGAT
GAGGTTACAG AAGATCATGC AGCAGCTACT TGGCGCTCTT TTAAGCTGCA CTTACTACCC
TCACTTAAAG ACATCCCAAT AAGTCAAATT ACTGCGCCTA TGGTTATTGA ATTCTTAAGA
CCAATAGAAG CCAAAGGTAA TTTAGAAACA GTAAAACGAC TCACCCAAAG GTTAAACGAG
GTGATGATCT ATGCCGTAAA TACAGGGCTA ATACATGCCA ATCCCCTATC AGGTATTAAG
GCTATTTTCA AAAAACCTCG TAAAGAACAC TTAGCAGCCT TGAAGCCAGA TGAGTTACCG
GAGTTAATGC AAGCTATTGC CAACGCAAGT ATTAAAAAAG TGACTCGCTT TTTAATTGAA
TGGCAACTGC ACACTATGAC TAGACCAAAC GAAGCCGCCG CTGCTCGTTG GGATGAAATC
AATTTTGATG AGCGTATTTG GCTTATTCCT GCAGCAAGAA TGAAAATGCG CCGAGATCAC
CAGATCCCAC TAACAGAACA AACTTTAGCC CTCCTAGCAG CAATTAAGCC TATATCGGGA
CACAGAGAAT ATATTTTCCC TGCTGATAGA GATCCAAAAA CTCACAGCAA TGTACAAACG
GCTAATGCTG CATTAAAACG CATGGGCTTA AAAGACAGAA CTACAGCGCA TGGTTTTAGG
TCTCTAGCAA GTACCACACT CAATGAGCAG GGCTTTGATC CTGATGTAAT CGAAGCAGCG
CTCGCTCACA CGGATAAAAA TCAAGTACGC AGTGCCTATA ACCGCAGTAT TTACCTTGAC
CGCCGACGAG AAATGATGAC CTGGTGGAGT AACTACATAG TGGAAGCAGC TAAAGGGAAC
GTCAGTCTTG CGCATAATGC CAGAAATTTA AGGCTTGTAG CTCAATAA
|
|---|
| Protein sequence | MARLTKPLSD TEIKTAKPKD KEYNLADGGG LQIRIKPNGS KLWLLNYSHP ITKKRQNLSL
GTYPDISLLS ARKLAQEART LLAHGTDPKA HREAQIAAKA AIIEHTFGKI AAEWFERKKD
EVTEDHAAAT WRSFKLHLLP SLKDIPISQI TAPMVIEFLR PIEAKGNLET VKRLTQRLNE
VMIYAVNTGL IHANPLSGIK AIFKKPRKEH LAALKPDELP ELMQAIANAS IKKVTRFLIE
WQLHTMTRPN EAAAARWDEI NFDERIWLIP AARMKMRRDH QIPLTEQTLA LLAAIKPISG
HREYIFPADR DPKTHSNVQT ANAALKRMGL KDRTTAHGFR SLASTTLNEQ GFDPDVIEAA
LAHTDKNQVR SAYNRSIYLD RRREMMTWWS NYIVEAAKGN VSLAHNARNL RLVAQ
|
|---|
| |