Gene SO_1358 details

Gene Information

• Locus tag: SO_1358
• Symbol: rimM
• ID: 1169179
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 1413702
• End bp: 1414235
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637343302
• Product: 16S rRNA-processing protein RimM
• Protein accession: NP_716978
• Protein GI: 24372936
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGATGAGCA GTAACCAACA GCCAGTCGTA CTGGGGAAAT TAGGCTCCTG TCATGGCATT 
AAAGGTTGGC TGAAAATCAC CGCCTATACC GATTCTGTTG AAGGTATCTT TGACTATTCG 
CCTTGGCTTA TTAAAGAAAA TGGCGAATGG CGTGAAGTAA AAGTCATTCA GTGGCGTTAC 
CAAGGCAAGG CCGTTGTTGC TGAGCTTGAA GGTGTCACCA CGCGGGAGCG GGCGCAAATG 
CTCACCAATT GCGAAATTGG TATCCTGCCA CAGCAGATGA ATGCATTGCC AGAAGACGAG 
TTCTATTGGC GTGATCTTAT CGGTTGTGAA GTGATTAATA CTACTGGCTA TAACATGGGC 
ATTGTCGATC AAATCGTGGA AACCGGTTCG AACGATGTAC TGCTTGTTAA AGCCAACGCT 
AAAGATAGTT TCGGCAAAGT GGAACGTATG GTTCCCTTTG TCCCAGGACA GTTCATCCTA 
AAGGTGGATG TCCAAGGTAA ACAGATTTTA GTGGATTGGG ATCCTGACTT TTAA 

 

Protein sequence

MMSSNQQPVV LGKLGSCHGI KGWLKITAYT DSVEGIFDYS PWLIKENGEW REVKVIQWRY 
QGKAVVAELE GVTTRERAQM LTNCEIGILP QQMNALPEDE FYWRDLIGCE VINTTGYNMG 
IVDQIVETGS NDVLLVKANA KDSFGKVERM VPFVPGQFIL KVDVQGKQIL VDWDPDF