Gene SO_1342 details

Gene Information

• Locus tag: SO_1342
• Symbol: rpoE
• ID: 1169163
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 1399196
• End bp: 1399774
• Gene Length: 579 bp
• Protein Length: 192 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 637343286
• Product: RNA polymerase sigma factor RpoE
• Protein accession: NP_716962
• Protein GI: 24372920
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family; [TIGR02939] RNA polymerase sigma factor RpoE

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTGGAC AAATAAGTGA TCAACAATTA GTTGAGCGCG TACAACGGGG TGATAAAAAC 
GCTTTTAACC TGTTAGTGCT TAAATATCAG AGTAAAGTGA TTAGCTTGAT TTCACGCTAT 
GTGCGTAACC AAGCAGATGT TACTGATGTA GCACAGGAAG CGTTTATCAA AGCTTATCGA 
GCTTTGCCAA ACTTTCGCGG AGAAAGTGCG TTTTATACCT GGTTGTACCG AATAGCCGTT 
AATACGGCAA AGAATTACCT CGTGTCTCAG GGGCGTAGAG CTCCTGCAAA TGATGTGGAT 
GCTGAGGATG CCGAATATTA CGAAGGCAGT GATGCGCTAA AGGAGTTTGC CTCCCCAGAG 
CGACTAATGT TATCGGACGA AATCAAAAAA GTGGTTTTCG AAACTTTAGA AACATTGCCT 
GAAGAATTAC GTATGGCAAT TTCATTGCGT GAACTTGATG GGATGAGTTA CGAAGATATT 
GCCATCATCA TGGATTGCCC TGTAGGAACG GTAAGATCTC GTATCTTTCG CGCCCGTGAA 
GCAATCGATA AAAAGCTCCA GCCTTTGCTG GAAGAGTAA 

 

Protein sequence

MSGQISDQQL VERVQRGDKN AFNLLVLKYQ SKVISLISRY VRNQADVTDV AQEAFIKAYR 
ALPNFRGESA FYTWLYRIAV NTAKNYLVSQ GRRAPANDVD AEDAEYYEGS DALKEFASPE 
RLMLSDEIKK VVFETLETLP EELRMAISLR ELDGMSYEDI AIIMDCPVGT VRSRIFRARE 
AIDKKLQPLL EE