Gene SO_1301 details

Gene Information

• Locus tag: SO_1301
• Symbol: pyrB
• ID: 1169124
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 1353321
• End bp: 1354340
• Gene Length: 1020 bp
• Protein Length: 339 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 637343247
• Product: aspartate carbamoyltransferase
• Protein accession: NP_716921
• Protein GI: 24372879
• COG category: [F] Nucleotide transport and metabolism
• COG ID: [COG0540] Aspartate carbamoyltransferase, catalytic chain
• TIGRFAM ID: [TIGR00670] aspartate carbamoyltransferase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACCAGT TCGAAGGATC CCATATCCTC TCCGTAAACC AGTTAGATCT TGATTCAATC 
CAAACTATTT TTAATGTCGC CCACCGCATG ATGCCCTATG CTCTTCGAGA GAAGCGCACA 
AAAGTGCTCG AAGGCGCCAT TTTAGGTAAC CTGTTTTTCG AGCCAAGTAC CCGTACCCGC 
GTCAGTTTTG GCTGTGCCTT TAACTTACTC GGCGGCCATG TGCGTGAAAC CACAGGCATG 
GCCTCTTCGT CCTTATCTAA GGGTGAATCC CTGTACGATA CAGCCCGCGT ACTCTCGACC 
TATTCCGATG TGATTGCGAT GCGCCACCCT GATTCTTACT CTGTCAAAGA GTTTGCTGAA 
GGTAGCCGAG TCCCCGTGAT CAACGGCGGT GATGGTTCGA ACGAGCACCC AACCCAAGCA 
TTGCTCGATT TGTTTACTAT TCAAAAAGAG TTAGGTCATG CGAGTCGAGG CATCGATGGC 
ATGCATATCG CCATGGTTGG CGATTTAAAA TTTGGCCGTA CCGTGCATTC ATTGTCACGC 
CTGCTATGCA TGTATAAGAA CATCAGCTTC ACACTGATTT CGCCAACTGA ATTAGCTATG 
CCTGATTATG TGATCTCTGA CATTGAAAAT GCTGGCCATA GCATCAAAAT AACAGACCAG 
CTTGAAGGCC ACTTAGATAA AGCCGATATT CTTTATCTGA CCCGCATTCA AGAAGAGCGC 
TTCCCATCCC AGGAAGAAGC AAACAAATAC CGCGGTAAAT TCCGTTTGAA TCGCAGTATT 
TATACCCAAC ATTGCAAATC TAACACTGTG ATCATGCACC CGCTGCCACG GGATTCGCGT 
GCGCAAGCTA ATGAATTAGA TAATGATTTG AACAGCCATC CTAATCTCGC TATTTTCAGA 
CAGGCGGACA ATGGACTGCT AATTCGTATG GCACTGTTTG CATTGACACT CGGGGTTGAC 
TCGCAACTCG AAAAATATGA GTGTCCAGTT AATTGGTATT CACGTAAAGC CGATCGCTAA 

 

Protein sequence

MNQFEGSHIL SVNQLDLDSI QTIFNVAHRM MPYALREKRT KVLEGAILGN LFFEPSTRTR 
VSFGCAFNLL GGHVRETTGM ASSSLSKGES LYDTARVLST YSDVIAMRHP DSYSVKEFAE 
GSRVPVINGG DGSNEHPTQA LLDLFTIQKE LGHASRGIDG MHIAMVGDLK FGRTVHSLSR 
LLCMYKNISF TLISPTELAM PDYVISDIEN AGHSIKITDQ LEGHLDKADI LYLTRIQEER 
FPSQEEANKY RGKFRLNRSI YTQHCKSNTV IMHPLPRDSR AQANELDNDL NSHPNLAIFR 
QADNGLLIRM ALFALTLGVD SQLEKYECPV NWYSRKADR