| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1297 |
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| Symbol | gspA |
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| ID | 1169117 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 1347147 |
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| End bp | 1348811 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637343241 |
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| Product | general secretion pathway protein a |
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| Protein accession | NP_716918 |
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| Protein GI | 24372876 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3267] Type II secretory pathway, component ExeA (predicted ATPase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTACAAGG CCTTTTATGG ACTCAGTGAT AACCCTTTTT CGATTGCACC CAATCCTCAT
TATTTATTCT TGAGTGACAG ACACAGAGAA GCCTTAGCCC ATTTAACCTA TGGACTAGGA
GAAACTGGTG GCTTTGTGTT ATTAACGGGG GAGGTAGGTA CAGGGAAGAC AACAGTATCT
CGTTGTTTGC TTGGGCAATT GCCCGATAAT ACCGATACCG CATTTATTTT AAATCCTTCG
CTGACTGAGT TGGAGTTACT CGCCACATTG TGTGATGAGT TGAAGATTAG CTATGGCGAA
AATCCAACAC TCAAGCAATT GACTGATCAT CTGAGCCGTT TTTTACTGGC CAATCATGAG
AAGGGCCGCA AAACCGTACT TATTATCGAT GAGGCGCAGC ATCTTCGCGC TGAAGTATTA
GAGCAATTAA GGTTGCTGAC TAATCTTGAG ACCGATACTA AAAAACTGCT GCAAGTTATT
TTGATTGGTC AACCTGAACT GCAACTGTTA CTTAAACGGC AAGAACTCCG CCAGTTAGCC
CAGCGGATCA CTGCTCGTTA TCATTTATTA CCCTTAAATG AAGACGAAAT AACCCTTTAC
GTATTGCACC GTTTGCAGGT TGCTGGTCGT TTTGAACCAT TATTTACCCG AAAAGCCATT
AAGGTGTTGC ATAAATACAG TGGTGGTATC CCTCGTCTAA TCAACTTGTT GTGCGAGCGA
GCCCTGATGG CGGGGTATGC TCAATCTAAA GTACCTATTG ATCATCATAT GGTGAGGCAA
GCGGCGGCTG AAGTATTAGG AGAGGAAAAA CCTTCGCAGA ATAAGTTCCT GTGGCCGAGT
GCGATTGCAG CCGCCCTTGT TCTCACTTTC GGTGTGTCTT ACTGGTTGTT TACGGATCAT
GCTGTCGTTG CCACTGTGGC GAACGAGAAC GTGACTCAAC CTAAGCAAAC CGTTATTGCT
GAAAATGCCG TCCAGCAAAG CCAAACGGCA TTAACGAATA CTGCGCCAGC GATCACTCTG
GCTCAAACAC CTGCGGCACC GGATCCGAAC TTGCGCGTGT TGCAGGAGGC TATAAAGCAG
AGTCGACAAA TTGATACAGC CTTTGCTGGT CTCTTTAATG TGTGGGGTAA AGTCCCCTTT
AAAGGCTTAA CCGCCTGTCA GTCAGCATTT GAGCAGGGAC TGTCATGTTA CCAGCAGCAA
GGCAATTGGA TGTCGCTCAC GCGGCTAAAT TATCCTGCGG TTGTATATTT AGTTGATGAT
AATCAACAAG ATTTTTATGG CGCTGTGATT GCGGTCGACG GTGAGCAATT GCTAATGCAG
TTAGGCGAGC AACAATTGTG GGTGGAAAGG ACTTGGTTTA ATCAACATTT TAGTGGCACG
TTTGAAATAC TGTGGCAAGC GCCCAATCTG CCTATGATGG AAATTAGCCA GAAATCGAGC
CCTGGACAAC TACAGTGGTT GGAGAATGCT CTAGCGCATG TGGCTAAACG ACCTTCACGC
CGAGTCAGCC AATTTGATCT TAAGTTGGAG AATGATCTTA AAGCCTTCCA AAGCCAACAT
GGTTTGAAGG CTGACGGTAT TGCAGGTAAT CAAACTTTAG TGAGACTGAA TTTGTACTTA
AGTGATCAAG GGCCGCGCCT AACCGATAAT GGAGCGCAGA GTTAA
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| Protein sequence | MYKAFYGLSD NPFSIAPNPH YLFLSDRHRE ALAHLTYGLG ETGGFVLLTG EVGTGKTTVS
RCLLGQLPDN TDTAFILNPS LTELELLATL CDELKISYGE NPTLKQLTDH LSRFLLANHE
KGRKTVLIID EAQHLRAEVL EQLRLLTNLE TDTKKLLQVI LIGQPELQLL LKRQELRQLA
QRITARYHLL PLNEDEITLY VLHRLQVAGR FEPLFTRKAI KVLHKYSGGI PRLINLLCER
ALMAGYAQSK VPIDHHMVRQ AAAEVLGEEK PSQNKFLWPS AIAAALVLTF GVSYWLFTDH
AVVATVANEN VTQPKQTVIA ENAVQQSQTA LTNTAPAITL AQTPAAPDPN LRVLQEAIKQ
SRQIDTAFAG LFNVWGKVPF KGLTACQSAF EQGLSCYQQQ GNWMSLTRLN YPAVVYLVDD
NQQDFYGAVI AVDGEQLLMQ LGEQQLWVER TWFNQHFSGT FEILWQAPNL PMMEISQKSS
PGQLQWLENA LAHVAKRPSR RVSQFDLKLE NDLKAFQSQH GLKADGIAGN QTLVRLNLYL
SDQGPRLTDN GAQS
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