Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_1284 |
Symbol | rpoD |
ID | 1169104 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 1335571 |
End bp | 1337421 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637343229 |
Product | RNA polymerase sigma-70 factor |
Protein accession | NP_716906 |
Protein GI | 24372864 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGATCATA CTCCGCAGTC GCAACTCAAG CTGTTGCTTG CCAAAGGTAA AGAGCAAGGT TACTTAACCT ATGCAGAAGT GAACGACCAC TTACCTGCAG ACATGGTCGA TTCTGACCAG ATCGAAGATA TTATCCAGAT GATAAATGAC ATGGGTATTC GGGTATTCGA AGAGGCTCCC GACGCCGATG ACATGATGAT GTCGGAAGAC AACACAGACG AAGATGCAGC AGAAGAAGCC GCAGCAGCCC TTGCCACGGT AGAAAGTGAG CTTGGCCGCA CCACAGACCC TGTGCGTATG TACATGCGCG AAATGGGTAC CGTTGAACTG CTGACTCGCG AAGGCGAAAT TGTTATCGCC AAGCGCATCG AAGAAGGCAT TAACACAGTT CAAAGCTCTG TCGCCGAGTA CCCACAAGCG ATCGCCATGA TCCTTGAGCA GTACGACCAG TACGAAGCCG ACGAACTGCG CCTGTCTGAT ATTATCTCTG GATTTGTTAA CCCTGACGAA GAAGACCTCG GTCCAACCGC AACCCACATC GGTTCTGAAT TATCAGAAGA AGATCTTGAA GATGAAGATG ACGAGGAAGA CGATGAAGAC GAAGACGGTG ATGGCGACGG TGATGATGAT GGCAATAAAG GCCCCGATCC TGAAGAGGCT CGTGAGCGTT TTAGCCAACT AAGAACTGCC TACGAAAGCG CGCTTAAAAT TATTGACGCC AAAGGCCGTG AACATCCTGA GTCGATTCAA GCACTGTTTG AAATCGGCGA GATTTTCAAA GAGTTCCGCT TAGTACCTAA GCAGTTCGAT CGCTTAGTGA AAAGCATGCG TTCTATGATG GACCGTGTTC GCGTACAAGA GCGTCTACTA ATGAAGCTTT GTGTCGAACA GGCCAAAATG CCGAAGAAAA ATTTTGTTAA GTTCTTCACA GGTAATGAGA CCAACCTCGA TTGGTTCGAG GCCGAAAAAA CCTCAAACAA ACCTTATGCC GAAGGCTTAA GAATGGTTGA GGAAGACGTA CAACGTTGCC GTAGCAAGCT GGCCGCCATC GAAGAAGAAA CCGGTTTAGT CATTGCCGCG ATTAAAGATA TTAACCGCCG TATGTCAATC GGTGAAGCCA AGGCTCGCCG TGCGAAGAAA GAAATGGTTG AGGCAAACTT ACGTTTGGTT ATTTCTATCG CCAAGAAATA CACCAACCGT GGCCTGCAAT TCTTGGACTT GATCCAAGAA GGTAATATCG GTCTGATGAA GGCCGTTGAT AAATTTGAAT ATCGCCGTGG TTATAAGTTC TCGACCTATG CAACTTGGTG GATCCGTCAG GCAATCACCC GCTCAATCGC GGACCAAGCC CGTACGATCC GTATTCCAGT ACATATGATC GAAACGATCA ACAAGCTGAA CCGTATCTCT CGCCAAATGC TACAGGAAAT GGGCCGTGAA CCCTCACCTG AAGAACTGGC AGAGCGTATG ATGATGCCGG AAGATAAGAT CCGTAAGGTA CTGAAAATCG CTAAAGAACC TATCTCCATG GAAACCCCAA TCGGTGACGA TGAAGATTCG CATTTAGGCG ATTTTATCGA GGATACTACC CTCGAATTAC CACTGGACAG CGCCACCAGC GAAAGCCTGA AGAGCGCCAC CCATGAGGTA TTAGCAGGCC TAACAGCCCG TGAAGCAAAA GTGCTGCGCA TGCGTTTTGG TATCGATATG AATACCGACC ACACACTTGA AGAAGTGGGT AAGCAATTTG ACGTGACCCG TGAACGTATT CGTCAAATTG AAGCAAAAGC ACTACGTAAA CTGCGCCACC CTTCACGCTC AGAAATCTTA AAGTCCTTCT TAGACGAATA G
|
Protein sequence | MDHTPQSQLK LLLAKGKEQG YLTYAEVNDH LPADMVDSDQ IEDIIQMIND MGIRVFEEAP DADDMMMSED NTDEDAAEEA AAALATVESE LGRTTDPVRM YMREMGTVEL LTREGEIVIA KRIEEGINTV QSSVAEYPQA IAMILEQYDQ YEADELRLSD IISGFVNPDE EDLGPTATHI GSELSEEDLE DEDDEEDDED EDGDGDGDDD GNKGPDPEEA RERFSQLRTA YESALKIIDA KGREHPESIQ ALFEIGEIFK EFRLVPKQFD RLVKSMRSMM DRVRVQERLL MKLCVEQAKM PKKNFVKFFT GNETNLDWFE AEKTSNKPYA EGLRMVEEDV QRCRSKLAAI EEETGLVIAA IKDINRRMSI GEAKARRAKK EMVEANLRLV ISIAKKYTNR GLQFLDLIQE GNIGLMKAVD KFEYRRGYKF STYATWWIRQ AITRSIADQA RTIRIPVHMI ETINKLNRIS RQMLQEMGRE PSPEELAERM MMPEDKIRKV LKIAKEPISM ETPIGDDEDS HLGDFIEDTT LELPLDSATS ESLKSATHEV LAGLTAREAK VLRMRFGIDM NTDHTLEEVG KQFDVTRERI RQIEAKALRK LRHPSRSEIL KSFLDE
|
| |