| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1276 |
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| Symbol | gabT |
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| ID | 1169096 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 1325610 |
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| End bp | 1326887 |
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| Gene Length | 1278 bp |
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| Protein Length | 425 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637343221 |
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| Product | 4-aminobutyrate aminotransferase |
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| Protein accession | NP_716899 |
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| Protein GI | 24372857 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0160] 4-aminobutyrate aminotransferase and related aminotransferases |
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| TIGRFAM ID | [TIGR00700] 4-aminobutyrate aminotransferase, prokaryotic type |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCACAA CTAATGATTC ATTAATGGCG CGTCGCCAAG CCGCCGTAGC GGGTGGTGTT
GGTCAAATTC ACCCGATTTT TACTGCCCGT GCTGAAAATG CCAGCGTATG GGATGTCGAA
GGTCGTGAGT TTATCGATTT TGCCGGAGGC ATTGCCGTGC TAAATACTGG GCATTTGCAT
CCTAAGGTAA AGGCCGCTGT AGCGGCGCAG CTTGAAGATT TCTCCCATAC TTGCTTTATG
GTGCTTGGCT ATGAAAGTTA CATCCAAGTC TGCGAAAAAC TCAATCAATT AGTGCCTGGT
GATTTTGCTA AAAAAACTGC CTTGTTTACC AGTGGTTCAG AAGCAGTTGA AAACGCGGTA
AAAGTAGCTC GCGCTTACAC CAAGCGTGCC GGAGTGATTG CGTTTACCTC GGGCTACCAT
GGCCGCACTA TGGCAGCACT TGCGTTAACC GGTAAAGTGG CGCCCTACAG TAAAGGCATG
GGGTTAATGT CAGCCAACGT GTTTCGCGCC GAATTCCCCT GTGCACTGCA CGGTGTATCT
GATGATGATG CTATGGCTTC GATTGAACGC ATCTTTAAAA ACGATGCGGA GCCAAGTGAT
ATTGCCGCAA TTATTCTCGA ACCTGTGCAA GGTGAGGGCG GATTTTATGC CGTATCCCCC
GCATTTATGC AGCGTTTACG GGCGCTCTGC GACCGTGAAG GCATTATGCT GATTGCCGAT
GAGGTGCAAA CGGGGGCTGG TCGCACTGGG ACCTTTTTTG CGATGGAGCA AATGGGTGTA
AGCGCTGATA TTACAACCTT TGCCAAATCC ATTGCCGGTG GTTTTCCACT ATCTGGCATT
ACTGGACGCG CGCAGGTAAT GGATGCCATT GGCCCCGGTG GTTTAGGTGG CACCTACGGC
GGTAACCCGC TCGCTTGCGC TGCGGCGCTT GCTGTGCTTG AGGTGTTTGA GGAAGAAAAA
CTGCTTGAGC GCGCTAACGC CATTGGTGAT CGGATTAAGT CGGCGCTAAA TACTATGCAA
GTAGAGCATC CGCAAATTGC CGATGTGCGC GGCTTAGGGG CCATGAACGC CATTGAATTG
ATGGAGGATG GCAAACCAGC GCCTCAGTAT TGCGCGCAAA TCTTAGCAGA GGCGAGAAAC
CGTGGGTTAA TCCTGTTGTC CTGCGGCACA TATGGCAATG TGCTGCGAAT TTTGGTGCCG
TTAACTGTGT CGGACACCCA GTTAGATGCG GGGCTGGGTA TTTTGAAAAC GAGCTTCAAT
GCTGTGTTAA AAGGTTAG
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| Protein sequence | MSTTNDSLMA RRQAAVAGGV GQIHPIFTAR AENASVWDVE GREFIDFAGG IAVLNTGHLH
PKVKAAVAAQ LEDFSHTCFM VLGYESYIQV CEKLNQLVPG DFAKKTALFT SGSEAVENAV
KVARAYTKRA GVIAFTSGYH GRTMAALALT GKVAPYSKGM GLMSANVFRA EFPCALHGVS
DDDAMASIER IFKNDAEPSD IAAIILEPVQ GEGGFYAVSP AFMQRLRALC DREGIMLIAD
EVQTGAGRTG TFFAMEQMGV SADITTFAKS IAGGFPLSGI TGRAQVMDAI GPGGLGGTYG
GNPLACAAAL AVLEVFEEEK LLERANAIGD RIKSALNTMQ VEHPQIADVR GLGAMNAIEL
MEDGKPAPQY CAQILAEARN RGLILLSCGT YGNVLRILVP LTVSDTQLDA GLGILKTSFN
AVLKG
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