Gene SO_1233 details

Gene Information

• Locus tag: SO_1233
• Symbol: torC
• ID: 1169059
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 1284770
• End bp: 1285948
• Gene Length: 1179 bp
• Protein Length: 392 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 637343184
• Product: tetraheme cytochrome c
• Protein accession: NP_716856
• Protein GI: 24372814
• COG category: [C] Energy production and conversion
• COG ID: [COG3005] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit
• TIGRFAM ID: [TIGR02162] trimethylamine-N-oxide reductase c-type cytochrome TorC

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGTGGT TAATCAACCT CTGGCGCACA CTAAACAAAC CCACAAAAGC TCTCACCTTA 
GGCGCTGTCA GCATTAGTGC TTTTATCATG GGCATCATCT TCTGGGGCGG ATTTAACACC 
GCACTGGAAG CTACCAATAC CGAAGCCTTC TGCATCAGTT GCCACAGTAT GGAGAGCAAA 
CCCTACCAAG AGCTGCAGGA AACAGTGCAT TGGTCGAATC ACTCAGGCGT GCGCGCCACG 
TGCCCAGACT GCCACGTGCC CCATAACTGG AGCCGTAAAA TTGCCCGTAA GATGGAAGCC 
TCCCACGACG TTTGGGGCTG GTTATTCAAT ACGGTCAACA CCCCTGAAAA ATTTGAAGCT 
AAACGCCTCG AAATGGCAAG CCGTGAGTGG AAGCGTTTTG ATCGCGACAA CTCTCTGGCG 
TGTAAAAACT GCCACAACTA CAACTCGATG AAGTGGGAAA GCATGTCACC GCTGGCGCAA 
AAACAGATGA AACGCGCCGC TGAAATCGAT CAAAGCTGTA TCGATTGCCA CAAAGGCATT 
GCTCACCATC TACCTGAAAT GGGCACGGCC CGAGCACCTG AACTCATCGC CGAAGTCGGC 
GCTGGCGTCA GCTCACTGGA AACCAACCAA ACCTACTACA GTGCCCTAAC TAAGCCACTG 
TTCTTTAGTG AAAAAGGCGA TGTTGAAGCA GGTACCTTAA ACGTAGCCAC TAAAGTCAAA 
GTGCTCGAAA CTAAAGGTAA GCGCATCAAA ATTGGTATCG ATGGCTGGCG TAAGAAAATC 
GGCGCAGGCC GCGTGATCTA CATGGACTTT GGCGTAAACA TTCTGTCGGC GCAGTTAAGC 
AAAGATGCAG CCGAAACAGA AGGTGTTATC CAAACCTTTG AAGAGAAAGA AGATCCAATG 
ACGGGCCTAA AATGGCAACG CGTTGAAGCC CAAATCTGGA CCGATAAGGA TTACCTGCTC 
ACCGAGCTGC AACCACTCTG GGGCTATGCC CGCGATACGT TCCGCTCAAG CTGTAGTGTG 
TGCCACACCC AGCCAGATGA AGCGCATTTC GATGCCAATA CCTGGCCTGG CATGTTCCAA 
GGCATGTTGG CCTTCGTGAA CATGGACCAA GACACCCAAG CACTGGTGCA AAAATACCTG 
CAAGAACATT CGTCAACCTT CGTGAAAAAA GAGCACTAA 

 

Protein sequence

MKWLINLWRT LNKPTKALTL GAVSISAFIM GIIFWGGFNT ALEATNTEAF CISCHSMESK 
PYQELQETVH WSNHSGVRAT CPDCHVPHNW SRKIARKMEA SHDVWGWLFN TVNTPEKFEA 
KRLEMASREW KRFDRDNSLA CKNCHNYNSM KWESMSPLAQ KQMKRAAEID QSCIDCHKGI 
AHHLPEMGTA RAPELIAEVG AGVSSLETNQ TYYSALTKPL FFSEKGDVEA GTLNVATKVK 
VLETKGKRIK IGIDGWRKKI GAGRVIYMDF GVNILSAQLS KDAAETEGVI QTFEEKEDPM 
TGLKWQRVEA QIWTDKDYLL TELQPLWGYA RDTFRSSCSV CHTQPDEAHF DANTWPGMFQ 
GMLAFVNMDQ DTQALVQKYL QEHSSTFVKK EH