| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1232 |
|---|
| Symbol | torA |
|---|
| ID | 1169058 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 1282265 |
|---|
| End bp | 1284754 |
|---|
| Gene Length | 2490 bp |
|---|
| Protein Length | 829 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637343183 |
|---|
| Product | trimethylamine-N-oxide reductase |
|---|
| Protein accession | NP_716855 |
|---|
| Protein GI | 24372813 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
|---|
| TIGRFAM ID | [TIGR00509] molybdopterin guanine dinucleotide-containing S/N-oxide reductases
[TIGR02164] trimethylamine-N-oxide reductase TorA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGAA GAGACTTTTT AAAAGGCTTA GCCTCAACCT CTTTCGTTGC TTTAGGTGGC
AGCTCAGTAC TAGCGCCCTT AAATGCGCTG GCCAATACTG GCCTGAATGA AAACGAATGG
CTGACCACTG GCTCCCACTT CGGTGCCTTT AAAATCAAGC GTAAAAACGG CATGATTGCC
GAAGTCAAAG CCTTCGATTT AGATAAATAT CCAACGGATA TGATTAACGG TATCCGGGGT
ATGGTCTATA ACCCATCCCG CGTGCGTTAC CCGATGGTTC GCTTAGACTT TTTACTAAAA
GGCCATAAGA GTAATACCCA GCAGCGGGGG GATTTCCGCT TTGTTCGTGT GACCTGGGAT
AAAGCATTAA AGCTGTTTAA ACACTCACTC GATGAGGTCC AAACCAAGTA CGGTCCATCG
GGCTTACACG CAGGACAAAC TGGTTGGCGC GCCACGGGGC AACTGCATTC CAGCACCAGC
CATATGCAGC GCGCGGTGGG GATGCACGGT AATTTTGTGA AGAAAATCGG CGACTACTCC
ACCGGTGCAG GCCAAACCAT TCTGCCCTAT GTATTAGGCT CAACCGAAGT ATATGCCCAA
GGCACCTCTT GGCCACTGAT CTTAGAAAAC AGCAACACGA TTGTGCTGTG GTCAAACGAT
CCTTACAAAA ACCTGCAAGT GGGCTGGAAC GCTGAAACCC ATGAGGCCTT TGCGTACCTC
GCGCAATTAA AAGAGAAGGT CAAACAGGGT AAAATCCGCG TGATCAGTAT CGACCCTGTG
GTGACTAAAA CCCAGGCTTA CCTTGGCTGT GAGCAGTTGT ATGTGAACCC ACAGACTGAC
GTGACGCTGA TGCTGGCCAT CGCCCATGAG ATGATCACCC AAAAGCTACA CGATGAGAAA
TTCATCCAAG GTTACAGCTT AGGCTTTGAA GAGTTTGTGC CTTACGTGAT GGGCACTAAA
GATGGTATCG CCAAAACCCC TGAGTGGGCG GCGCCTATCT GCGGTGTTGA ACCACACATT
ATCCGCGATC TGGCCAAAAC CTTAGTTAAG GGCCGTACCC AAATAATGAT GGGTTGGTGT
ATTCAGCGCC AACAACACGG TGAGCAACCT TACTGGATGG CCGCAGTACT TGCGACCATG
ATAGGCCAAA TCGGCTTACC CGGCGGTGGT ATTAGCTATG GTCACCACTA CTCCAGTATT
GGTGTGCCGG CGACCACAGC TGCAGCTCCG GGCGCTTTCC CACGTAACTT AGACGAGAAT
CAAAAACCGC TGTTTGACAG CACAGACTTT AAAGGCGCAA GCAGCACGAT TCCCGTTGCC
CGCTGGATTG ATGCGATTCT CGAACCCGGC AAAACCATTG ATGCCAACGG TTCTAAAGTG
GTATATCCCG ATATTAAGAT GATGATTTTC TCGGGTAATA ACCCATGGAA CCACCATCAA
GACCGTAACC GCATGAAGCA AGCCTTCCAA AAGCTTGAAT GCGTGGTCTC TATTGATGTG
AACTGGACAG CCACTTGTCG TTTCTCCGAC ATCGTGTTGC CAGCTTGCAC CACCTATGAG
CGTAACGATA TCGACGTGTA CGGTGCCTAT GCCAACCGCG GTATTCTGGC GATGCAGAAA
ATGGTCGAGC CTTTGTTTGA AAGCTTGTCT GACTTTGAGA TCTTTACTCG TTTTGCCGCG
CTGCTGGGTA AAGAGAAAGA ATACACCCGC AATATGAGCG AAATGGAGTG GATAGAAACC
CTCTATAACG AGTGTAAAGC CGCTAACGCC GGTAAGTATG AGATGCCTGA CTTTGCCACC
TTCTGGAAGC AAGGTTATGT ACACTTTGGT GAAGGCGAAT TATGGACGCG CCACGCTGAC
TTTAGAAACG ATCCTGAAAT CAACCCATTA GGCACGCCTT CCGGTTTGAT TGAAATCTTC
AGTCGTAAGA TTGAACAATT TGGCTATGAT GACTGCCAAG GCCATCCTAT GTGGATGGAA
AAAGCTGAAC GCAGCCATGG TGGTCCAGGT TCGAATAAAT ATCCTATGTG GTTGCAATCT
TGCCATCCGG ATCACCGCTT ACACTCACAA ATGTGTGAGT CAAAGGAATA CCGCGAAACC
TACACAGTTA ATGGTCGCGA ACCTGTGTAT ATTAGCCCTG AAGATGCTAA AACCCGTGGC
ATTAAAGATG GCGATATCGT GCGGGTCTTT AACGACCGAG GTCAACTGTT AGCTGGCGCA
GTGGTATCGG ATCGTTTCCC TAAAGGTGTA GTGCGAATTC ATGAAGGTGC ATGGTATGGC
CCAGTGGGTA AAGATGGCAG CGTTGAAGGC GGAGCCGAAA TCGGTGCCCT GTGCAGCTAT
GGTGACCCTA ATACCCTAAC CTTAGACATT GGTACCTCTA AGTTGGCTCA AGCTTGCTCA
GCCTATACAT GTCTGGTTGA GTTTGAAAAA TACCAAGGTA AAGCACCTAA GGTTAGCTCC
TTCGATGGTC CTATCGAAGT TGAAATCTAA
|
|---|
| Protein sequence | MNRRDFLKGL ASTSFVALGG SSVLAPLNAL ANTGLNENEW LTTGSHFGAF KIKRKNGMIA
EVKAFDLDKY PTDMINGIRG MVYNPSRVRY PMVRLDFLLK GHKSNTQQRG DFRFVRVTWD
KALKLFKHSL DEVQTKYGPS GLHAGQTGWR ATGQLHSSTS HMQRAVGMHG NFVKKIGDYS
TGAGQTILPY VLGSTEVYAQ GTSWPLILEN SNTIVLWSND PYKNLQVGWN AETHEAFAYL
AQLKEKVKQG KIRVISIDPV VTKTQAYLGC EQLYVNPQTD VTLMLAIAHE MITQKLHDEK
FIQGYSLGFE EFVPYVMGTK DGIAKTPEWA APICGVEPHI IRDLAKTLVK GRTQIMMGWC
IQRQQHGEQP YWMAAVLATM IGQIGLPGGG ISYGHHYSSI GVPATTAAAP GAFPRNLDEN
QKPLFDSTDF KGASSTIPVA RWIDAILEPG KTIDANGSKV VYPDIKMMIF SGNNPWNHHQ
DRNRMKQAFQ KLECVVSIDV NWTATCRFSD IVLPACTTYE RNDIDVYGAY ANRGILAMQK
MVEPLFESLS DFEIFTRFAA LLGKEKEYTR NMSEMEWIET LYNECKAANA GKYEMPDFAT
FWKQGYVHFG EGELWTRHAD FRNDPEINPL GTPSGLIEIF SRKIEQFGYD DCQGHPMWME
KAERSHGGPG SNKYPMWLQS CHPDHRLHSQ MCESKEYRET YTVNGREPVY ISPEDAKTRG
IKDGDIVRVF NDRGQLLAGA VVSDRFPKGV VRIHEGAWYG PVGKDGSVEG GAEIGALCSY
GDPNTLTLDI GTSKLAQACS AYTCLVEFEK YQGKAPKVSS FDGPIEVEI
|
|---|
| |