Gene SO_1229 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_1229 
SymboltorT 
ID1169055 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp1276935 
End bp1278014 
Gene Length1080 bp 
Protein Length359 aa 
Translation table11 
GC content49% 
IMG OID637343180 
ProductTMAO reductase system periplasmic protein TorT 
Protein accessionNP_716852 
Protein GI24372810 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1879] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID[TIGR02955] TMAO reductase system periplasmic protein TorT 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAAAAT TTTGGCAAGC TTTGCTCACA CTCACCACTT TTAGCCTCTT ATGCTCACCG 
GTTGCCAAAG CGAATCCCCA AAGCTGGCCA TTAGAGCAAC GCAGTCCTTT TAATGCCAAA 
ATCCAGCAGT CACGCGCACT TGATTATCTT CCCCTGACGA AAGCACAACA AGCTTGGCGT 
CTGTGTGTCC TGGTCCCTCA TCTAAAAGAC GCTTATTGGA TTGGCATCGA TTATGGCCTA 
ATTCAACACG CTAAACACCT TGGCGTATCG CTGGATCTGT TCGAAGCGGG CAGTTATTAC 
CATCAAGATA AACAACTCGC GCAATTACGT TCGTGCATGA GCGGTGACTA CGATGCGATT 
TTACTCGGAG CCGTAAGTCC CAATCTACTC GAGCATTTTC CTCTGCCACT GAGCAAACCC 
ATAATCGCCC TCGTAAATAA GCTCAATTCA GACCAAGTGC TAACCCATAT TGGTGTTAAC 
TGGTATCAAA TGGGGCTGCG GGCAGGCCAA TTTATTAAAG CGGATGCCAA GGTTCACACC 
CCGACACAAC CCACAACCTT GGCGCTCTTA GCTGGACCGG AAAATGTAGG CGGTACCGAT 
TTGGTCGAAC AAGGGATTCG TCATGCCCTT GAAGGCAGCA ATGTCAGCAT CAGTGCCATT 
CAGCATGCAG ATAACAACCG TAATCTCTAC CGCGATCAAT TACAGATACT GCTAAAAGCG 
CAGCAGCCCA ACTATATTCT CGGCAGTGCA GTTGCAATTG AAGCGGCCGT TAGCACCCTC 
AAGCAAAAGC ACATGACACA GGATATCAAA CTCGTCAGTA GTTACTTATC CCCTGCAATT 
CTGCGAGGAC TGAAGCGGCA AAAAGTACTC TACAGCAATG ATGACCTTGT GGTGTTACAG 
GGGAAACTGG CGATTGATGT CGCAGTGAAA CAGCTCGAAG GCGCCACGCC ATTTGGCGAT 
ATTGGTCCAG CTATCGTCGG ACGCACAATG TCGGCAAACA CCCAGTCGGA GCTTAGTTTT 
AGCCTTGCCG AAGCGGATTT TTATCCTCTA TATCAAGTAC GGCCTCCATC TTTACCTTAG
 
Protein sequence
MEKFWQALLT LTTFSLLCSP VAKANPQSWP LEQRSPFNAK IQQSRALDYL PLTKAQQAWR 
LCVLVPHLKD AYWIGIDYGL IQHAKHLGVS LDLFEAGSYY HQDKQLAQLR SCMSGDYDAI 
LLGAVSPNLL EHFPLPLSKP IIALVNKLNS DQVLTHIGVN WYQMGLRAGQ FIKADAKVHT 
PTQPTTLALL AGPENVGGTD LVEQGIRHAL EGSNVSISAI QHADNNRNLY RDQLQILLKA 
QQPNYILGSA VAIEAAVSTL KQKHMTQDIK LVSSYLSPAI LRGLKRQKVL YSNDDLVVLQ 
GKLAIDVAVK QLEGATPFGD IGPAIVGRTM SANTQSELSF SLAEADFYPL YQVRPPSLP