| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1209 |
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| Symbol | pnp |
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| ID | 1169037 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 1254812 |
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| End bp | 1256920 |
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| Gene Length | 2109 bp |
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| Protein Length | 702 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637343163 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | NP_716833 |
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| Protein GI | 24372791 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTCACG TGAATCCAAT AGTAAAGAGT TTTGAGTATG GTCAACATAC AGTCACCCTG
GAAACAGGTG TCATTGCACG TCAAGCAGAT GCAGCCGTTT TAGCCAGCAT GGGTGACACG
ACAGTGTTAG TCACTGTTGT AGGTAAAAAA GAAGCCGAAG CTGGCCGTGA CTTCTTTCCT
CTGACTGTTA ATTATCAAGA AAAGACTTAC GCAGCAGGTA AGATCCCTGG CGGTTTCTTT
AAGCGTGAAG GCCGTCCTTC TGAAGAGGAA ACGTTAATCG CTCGTTTGAT TGACCGTCCA
ATTCGCCCTC TTTTCCCTAA TGGTTTCAAA AACGAAGTTC AAGTTATCAT CACTGTAGTA
TCTGTCGATC CAGAAATCGA GCCGGATATC ATCTCTATGA TCGGTACTTC TGCTGCATTA
GCGATTTCAG GTATTCCATT CAACGGCCCA TTAGGCGCTG CTCGTGTGGG CTACATTAAT
GGCGAATATG TATTAAACCC AACTGTGAAA CAAATCGGAG CTAGCCAACT TAACTTAGTG
GTAGCGGGTA CTGAAAGCGC AGTATTAATG GTTGAATCTG AAGCACAAGC CTTGCCAGAA
GAAGTGATGT TAGGCTCTGT GGTTTATGGT CATGACCAAC AACAAGTGGT TATCAAAGCG
ATTGCTGAAT TCAAAGCTGA AGCCGGTAAA CCTACTTGGG ATTGGACCGC GCCTGTTGAA
GATGAGGCGT TAGTCGCTCA AATTAAAGAG CTGGCTGAAG CAGGCTTTAT TGAAGCATAC
CAAATTCAAG TGAAACAAGA GCGTTACGCT CAAGTGGCTG TGGTAAAAGC TGCTGCTAAA
GAAGCATTAC TGGCCGCTAA TCCTGATGTT GATCTACGTG AAGTAGACAA CTTATTAGGT
AGCTTAGAGA AGAAAGTTGT GCGTGGACGC ATCCTACGTG GTATGCCACG TATCGATGGT
CGTGAACCTG ATATGGTTCG TGCATTAAGC GTGTTAGCGG GCGTATTGCC ACGTACCCAT
GGTAGTGCAT TGTTCACGCG CGGCGAAACA CAAGCGTTAG TGACTTGTAC TTTAGGTACT
GAACGTGATG CTCAGAAGAT TGATAGCATT ATGGGCGAGC GCACAAACCG CTTTATGCTG
CACTACAACT TCCCTCCTTA CTCTGTTGGT GAAACGGGGA TGGTCGGTTC ACCTAAGCGC
CGTGAAATCG GCCATGGAAA GCTCGCATGG CGTGGTATCA ATGCTGTTAT GCCATCTGCA
GAAGAGTTCC CATACAGTGT TCGTGTGGTT TCTGAGATTA CTGAATCAAA CGGTTCAAGC
TCTATGGCGT CAGTATGTGG TACTTCGTTA GCGCTGATGG ATGCGGGTGT ACCTATCAAG
ACTTCTGTAG CGGGTATCGC TATGGGTCTA GTGAAGGAAG GCGATGACTT CGTTGTTCTT
TCTGACATCT TAGGTGATGA AGATCACTTA GGTGATATGG ACTTTAAAGT GGCGGGTACC
CGTGATGGTG TAACTGCACT GCAAATGGAT ATCAAAATCG AAGGTATCAC CAAAGAAATC
ATGGAAATTG CACTGCAACA AGCCTATGGC GCACGTGTGC ATATCCTGAA CGTGATGGAC
CAAGCCATTG GTTCACACCG TGCTGATATC TCTGATCATG CTCCACGTAT TACCACCATC
AAGATTAACC CAGAGAAAAT CCGTGATGTT ATCGGTAAAG GCGGCGCAGT GATCCGTGCT
CTGACCGAAG AAACCGGCAC TACGATTGAA CTGGAAGATG ACGGTACTGT GAAGATTGCT
TCTTCAAATG GTGAAGCAAC CAAAGAAGCG ATTCGTCGTA TTGAAGAAAT CACTTCAGAA
GTTGAAGTAG GTCGCATCTA CAATGGTAAA GTGATTCGTA TCGTTGATTT CGGTGCTTTT
GTTAACATTC TGCCAGGTAA AGATGGTTTG GTGCACATTT CGCAAATCAG CGATGAGCGT
GTGGCTAACG TATCTGACCA CCTTGAACTA AACCAAGAAG TCACCGTTAA AGTAATGGAA
GTGGATCGTC AAGGTCGTGT AAGACTGTCA ATTAAAGAAG CACAGACGAA AGAACCTGCT
GCTGAATAA
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| Protein sequence | MGHVNPIVKS FEYGQHTVTL ETGVIARQAD AAVLASMGDT TVLVTVVGKK EAEAGRDFFP
LTVNYQEKTY AAGKIPGGFF KREGRPSEEE TLIARLIDRP IRPLFPNGFK NEVQVIITVV
SVDPEIEPDI ISMIGTSAAL AISGIPFNGP LGAARVGYIN GEYVLNPTVK QIGASQLNLV
VAGTESAVLM VESEAQALPE EVMLGSVVYG HDQQQVVIKA IAEFKAEAGK PTWDWTAPVE
DEALVAQIKE LAEAGFIEAY QIQVKQERYA QVAVVKAAAK EALLAANPDV DLREVDNLLG
SLEKKVVRGR ILRGMPRIDG REPDMVRALS VLAGVLPRTH GSALFTRGET QALVTCTLGT
ERDAQKIDSI MGERTNRFML HYNFPPYSVG ETGMVGSPKR REIGHGKLAW RGINAVMPSA
EEFPYSVRVV SEITESNGSS SMASVCGTSL ALMDAGVPIK TSVAGIAMGL VKEGDDFVVL
SDILGDEDHL GDMDFKVAGT RDGVTALQMD IKIEGITKEI MEIALQQAYG ARVHILNVMD
QAIGSHRADI SDHAPRITTI KINPEKIRDV IGKGGAVIRA LTEETGTTIE LEDDGTVKIA
SSNGEATKEA IRRIEEITSE VEVGRIYNGK VIRIVDFGAF VNILPGKDGL VHISQISDER
VANVSDHLEL NQEVTVKVME VDRQGRVRLS IKEAQTKEPA AE
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