Gene SO_1193 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_1193 
SymbolsecD 
ID1169021 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand
Start bp1235992 
End bp1237848 
Gene Length1857 bp 
Protein Length618 aa 
Translation table11 
GC content48% 
IMG OID637343146 
Productpreprotein translocase subunit SecD 
Protein accessionNP_716818 
Protein GI24372776 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATAACA TTCAGAGTAA AAAGCTGCTA AATCATTATT CAGCTTGGAA ATATATTGTA 
CTAATCGTCA CTATTATTGT GATGTTATTT AGCGCATTAC CCACCTGGTA TGGCGAAAAT
GCCGCAGTGC AAGTTGGCGC CAAAGCTGGA CTTAATCTTA CGCCCATTGA ACTGCGGGAT
AAGTTAAAAG CCCAAGGGAT AGAGGTTAAG CGTATTGAGG TTAAGCAACA TGGTGAGGAT
AAAGGGCAAA CTCTGATCGT CCTCAATGAT GACAGTGAGC AAACCTTAGT AAAAACCTTA
GTGTCATCTA TGGTCATTGA GCCAAAGGAA CTCACGCTGG CATTGGTGAG TGCGGCGCCG
AGTTGGCTAC AAAATCTCGG TTTTGAGCCA ATTAAGCTAG GGCTCGATTT ACGTGGTGGC
GTGCAATTTT TACTCGATGT GGATGTGCAG CCCGTCTACC AAGCCCAAGC CGATGCCTTA
GTCGAATCCT TAAGACAGTT TTTGCGCGAA CAGCAAATTC GTGGTGCCAG CGTACGTATC
GATAACACTC GTGATGATGT GGCGTTACAA ATCGCGATTG CATTGTCTGA TGCTGCGCAA
GCAGACAATA GCGCCCGCGC CGCCGTACGT CAGTTTATCC AGCAAAGCTA CCCGACTTGG
CAATTAACTA ATGCGGATAA TGGCTTAGTC ATCAAACTCA GCCAAGATGA GCAGAGCAAA
CTCCGTAATT TAACGGTGCA GCAAAACCTG CAAATTATGC GGAGTCGTAT TGAAGAGCTG
GGGATTACTG AAGCCTTGGT TCAGCGTCAG GGTGAACACC GCATTCGTAT CGAGTTACCC
GGAGTTCAAG ATCCCGCTGC CGCTAAAAAC GTGATTGGTG CGACCGCAAG CTTGGCCTTT
TTTGAAGTTA AAGAGTCAGG TTCTGTGAAT GCGCAGGTTC TGAAGGATAA GTCAGGAAAT
CCCGTTTACG TTGCTCGTTC ACCAGTGCTT GGCGGCGACC ATATTGTAGA TGCCCGTGCC
AATATTGGCG AAATGGGCAT GGCCGAGGTT AACATTCACC TTGACCGTAT TGGTGGGCAG
AAAATGTCGG AATTCTCCCG CGCCAATATC GGTAAACCTA TGGCAACATC CTACAGCGAA
TATAGCCGTG ATGAGCAAGG TAAAGCCAAG CAAACCCAAG AGATCATTAG CGTTGCGACC
ATTCAATCCC AACTTGGCGA TCGTTTCCGC ATTACTGGCG CTGGGACCTA TCAAGAAGCC
CAGCAATTAG CGCTGTTGTT GCGTGCAGGT TCAATGACGG CGCCTGTAAC TATCGTTGAA
GAACGTACTA TTGGCCCAAC CCTTGGTGCT GAAAACATTG AAAACGGCTT TGCAGCGCTC
GGCTTAGGTA TGGGGATTAC ACTGCTGTTT ATGGCGCTGT GGTATCGCCG TCTTGGTTGG
GTGGCAAACG TTGCACTGAT TTCTAACATG GTGATCCTGT TTGGCCTATT AGCACTTATT
CCTGGTGCAG TACTGACCTT ACCCGGTATT GCTGGCCTGG TGTTAACCGT TGGTATGGCG
GTTGATACTA ACGTACTCAT TTTCGAACGG ATAAAAGACA AGTTGAAGGA AGGCCGAAGT
TTTGCACTTG CCATCGACAC CGGTTTTGAC AGTGCGTTTT CAACTATTTT CGACGCCAAT
TTCACCACGA TGATTACCGC GGTTGTGCTC TATTCCATTG GTAATGGTCC GATCCAAGGT
TTTGCTTTGA CCTTAGGTTT AGGTCTATTG ACCAGTATGT TTACCGGTAT TTTTGCCTCA
AGAGCCTTAA TCAACCTAGT TTACGGGCGT GATGCGCGCC GTCATGTGAG GGTATAA
 
Protein sequence
MDNIQSKKLL NHYSAWKYIV LIVTIIVMLF SALPTWYGEN AAVQVGAKAG LNLTPIELRD 
KLKAQGIEVK RIEVKQHGED KGQTLIVLND DSEQTLVKTL VSSMVIEPKE LTLALVSAAP
SWLQNLGFEP IKLGLDLRGG VQFLLDVDVQ PVYQAQADAL VESLRQFLRE QQIRGASVRI
DNTRDDVALQ IAIALSDAAQ ADNSARAAVR QFIQQSYPTW QLTNADNGLV IKLSQDEQSK
LRNLTVQQNL QIMRSRIEEL GITEALVQRQ GEHRIRIELP GVQDPAAAKN VIGATASLAF
FEVKESGSVN AQVLKDKSGN PVYVARSPVL GGDHIVDARA NIGEMGMAEV NIHLDRIGGQ
KMSEFSRANI GKPMATSYSE YSRDEQGKAK QTQEIISVAT IQSQLGDRFR ITGAGTYQEA
QQLALLLRAG SMTAPVTIVE ERTIGPTLGA ENIENGFAAL GLGMGITLLF MALWYRRLGW
VANVALISNM VILFGLLALI PGAVLTLPGI AGLVLTVGMA VDTNVLIFER IKDKLKEGRS
FALAIDTGFD SAFSTIFDAN FTTMITAVVL YSIGNGPIQG FALTLGLGLL TSMFTGIFAS
RALINLVYGR DARRHVRV