Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_1193 |
Symbol | secD |
ID | 1169021 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 1235992 |
End bp | 1237848 |
Gene Length | 1857 bp |
Protein Length | 618 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637343146 |
Product | preprotein translocase subunit SecD |
Protein accession | NP_716818 |
Protein GI | 24372776 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATAACA TTCAGAGTAA AAAGCTGCTA AATCATTATT CAGCTTGGAA ATATATTGTA CTAATCGTCA CTATTATTGT GATGTTATTT AGCGCATTAC CCACCTGGTA TGGCGAAAAT GCCGCAGTGC AAGTTGGCGC CAAAGCTGGA CTTAATCTTA CGCCCATTGA ACTGCGGGAT AAGTTAAAAG CCCAAGGGAT AGAGGTTAAG CGTATTGAGG TTAAGCAACA TGGTGAGGAT AAAGGGCAAA CTCTGATCGT CCTCAATGAT GACAGTGAGC AAACCTTAGT AAAAACCTTA GTGTCATCTA TGGTCATTGA GCCAAAGGAA CTCACGCTGG CATTGGTGAG TGCGGCGCCG AGTTGGCTAC AAAATCTCGG TTTTGAGCCA ATTAAGCTAG GGCTCGATTT ACGTGGTGGC GTGCAATTTT TACTCGATGT GGATGTGCAG CCCGTCTACC AAGCCCAAGC CGATGCCTTA GTCGAATCCT TAAGACAGTT TTTGCGCGAA CAGCAAATTC GTGGTGCCAG CGTACGTATC GATAACACTC GTGATGATGT GGCGTTACAA ATCGCGATTG CATTGTCTGA TGCTGCGCAA GCAGACAATA GCGCCCGCGC CGCCGTACGT CAGTTTATCC AGCAAAGCTA CCCGACTTGG CAATTAACTA ATGCGGATAA TGGCTTAGTC ATCAAACTCA GCCAAGATGA GCAGAGCAAA CTCCGTAATT TAACGGTGCA GCAAAACCTG CAAATTATGC GGAGTCGTAT TGAAGAGCTG GGGATTACTG AAGCCTTGGT TCAGCGTCAG GGTGAACACC GCATTCGTAT CGAGTTACCC GGAGTTCAAG ATCCCGCTGC CGCTAAAAAC GTGATTGGTG CGACCGCAAG CTTGGCCTTT TTTGAAGTTA AAGAGTCAGG TTCTGTGAAT GCGCAGGTTC TGAAGGATAA GTCAGGAAAT CCCGTTTACG TTGCTCGTTC ACCAGTGCTT GGCGGCGACC ATATTGTAGA TGCCCGTGCC AATATTGGCG AAATGGGCAT GGCCGAGGTT AACATTCACC TTGACCGTAT TGGTGGGCAG AAAATGTCGG AATTCTCCCG CGCCAATATC GGTAAACCTA TGGCAACATC CTACAGCGAA TATAGCCGTG ATGAGCAAGG TAAAGCCAAG CAAACCCAAG AGATCATTAG CGTTGCGACC ATTCAATCCC AACTTGGCGA TCGTTTCCGC ATTACTGGCG CTGGGACCTA TCAAGAAGCC CAGCAATTAG CGCTGTTGTT GCGTGCAGGT TCAATGACGG CGCCTGTAAC TATCGTTGAA GAACGTACTA TTGGCCCAAC CCTTGGTGCT GAAAACATTG AAAACGGCTT TGCAGCGCTC GGCTTAGGTA TGGGGATTAC ACTGCTGTTT ATGGCGCTGT GGTATCGCCG TCTTGGTTGG GTGGCAAACG TTGCACTGAT TTCTAACATG GTGATCCTGT TTGGCCTATT AGCACTTATT CCTGGTGCAG TACTGACCTT ACCCGGTATT GCTGGCCTGG TGTTAACCGT TGGTATGGCG GTTGATACTA ACGTACTCAT TTTCGAACGG ATAAAAGACA AGTTGAAGGA AGGCCGAAGT TTTGCACTTG CCATCGACAC CGGTTTTGAC AGTGCGTTTT CAACTATTTT CGACGCCAAT TTCACCACGA TGATTACCGC GGTTGTGCTC TATTCCATTG GTAATGGTCC GATCCAAGGT TTTGCTTTGA CCTTAGGTTT AGGTCTATTG ACCAGTATGT TTACCGGTAT TTTTGCCTCA AGAGCCTTAA TCAACCTAGT TTACGGGCGT GATGCGCGCC GTCATGTGAG GGTATAA
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Protein sequence | MDNIQSKKLL NHYSAWKYIV LIVTIIVMLF SALPTWYGEN AAVQVGAKAG LNLTPIELRD KLKAQGIEVK RIEVKQHGED KGQTLIVLND DSEQTLVKTL VSSMVIEPKE LTLALVSAAP SWLQNLGFEP IKLGLDLRGG VQFLLDVDVQ PVYQAQADAL VESLRQFLRE QQIRGASVRI DNTRDDVALQ IAIALSDAAQ ADNSARAAVR QFIQQSYPTW QLTNADNGLV IKLSQDEQSK LRNLTVQQNL QIMRSRIEEL GITEALVQRQ GEHRIRIELP GVQDPAAAKN VIGATASLAF FEVKESGSVN AQVLKDKSGN PVYVARSPVL GGDHIVDARA NIGEMGMAEV NIHLDRIGGQ KMSEFSRANI GKPMATSYSE YSRDEQGKAK QTQEIISVAT IQSQLGDRFR ITGAGTYQEA QQLALLLRAG SMTAPVTIVE ERTIGPTLGA ENIENGFAAL GLGMGITLLF MALWYRRLGW VANVALISNM VILFGLLALI PGAVLTLPGI AGLVLTVGMA VDTNVLIFER IKDKLKEGRS FALAIDTGFD SAFSTIFDAN FTTMITAVVL YSIGNGPIQG FALTLGLGLL TSMFTGIFAS RALINLVYGR DARRHVRV
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