Gene SO_1169 details

Gene Information

• Locus tag: SO_1169
• ID: 1168998
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 1212623
• End bp: 1213093
• Gene Length: 471 bp
• Protein Length: 156 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 637343116
• Product: rRNA large subunit methyltransferase
• Protein accession: NP_716794
• Protein GI: 24372752
• COG category: [S] Function unknown
• COG ID: [COG1576] Uncharacterized conserved protein
• TIGRFAM ID: [TIGR00246] rRNA large subunit m3Psi methyltransferase RlmH

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGTTGC AACTTATCGC AGTGGGGACA CGGATGCCCG ATTGGGTCAC CCGCGGCTTT 
GAAGAGTACC AACGCCGCTT TCCTCGGGAT ATGGCGCTGG AACTTATCGA AATCCCTGCA 
GGCAAACGCG GAAAAAATGC TGACATAGTG CGCATCCTAC AAAAGGAAGG CGAGCAAATG 
TTAGCGGCGA TCCCTAAGGG CAATCACATT GTCACCTTAG ATCTTCCCGG CAAAAACTGG 
ACAACCCCAG AACTCGCGAG CGCCATGAAT AAGTGGCAAC TCGATGGCCG CGATGTGAGC 
TTGCTGGTTG GCGGCCCCGA AGGTTTAGCC CCCGCTTGTA AAGAAGCCGC CCATCAGAGT 
TGGTGCCTCT CGGCATTGAC CCTGCCCCAT CCGCTCGTGC GGATTGTGGT CGCCGAAAGC 
TTATACCGCG CGTGGAGCGT GAACACCAAT CACCCTTATC ACAGAGAATA G 

 

Protein sequence

MKLQLIAVGT RMPDWVTRGF EEYQRRFPRD MALELIEIPA GKRGKNADIV RILQKEGEQM 
LAAIPKGNHI VTLDLPGKNW TTPELASAMN KWQLDGRDVS LLVGGPEGLA PACKEAAHQS 
WCLSALTLPH PLVRIVVAES LYRAWSVNTN HPYHRE