Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_1100 |
Symbol | |
ID | 1168933 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 1141864 |
End bp | 1142976 |
Gene Length | 1113 bp |
Protein Length | 370 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637343051 |
Product | extracellular solute-binding protein |
Protein accession | NP_716726 |
Protein GI | 24372684 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTTATT TGGGGGGACT GTTATTTACG GTATTGTTTT TTGGTGCGAC TGGCTGTAAT CCCTCATCCC AACATGCTGA ACCTATTTCT AAAGCGTCCA TTACTGATGC ACCTCCCGTG AAGCAAGTGA TTGAATGGCG TTTAGCCACC TCTTGGCCGA AAAATTTCCC CGGCTTAGGT ATGGCGCCAG AGCGTTTTGC AACGCTGGTT AATGATATGT CCCATGGTCA ATTGCGCATT ACCGTGCACG GCGCTGGGGA ATTAATGCCT GCCTTTGCGG TATTCGACGG GGTTAGCCAA GGTAAAATTC AGATGGCCCA CGCCGCTTCC TATTATTGGA AGGGCAAAAC TCCCGCCTCA CAGTTTTTTT CTTCGATTCC ATTTGGAATG ACAGCACAGG AAATGAACGG CTGGTTGCAT TATGGCGGCA TGGCGCTGTG GGAGGAGGTT TATCGCCCCT TTGGTATTAT TCCCTTAGCA GGGGGAAATA CAGGCATGCA AATGGGCGGC TGGTTTAATA AACCCATCAA TACGATTGCC GACTTTAAAG GGCTGAAGAT CCGAATGCCA GGGCTTGGTG GAGAGGTACT TAAGCGTGTT GGCGCCGTGC CTGTTAATAT GGCTGGCAGA GAACTGTTTA GTGCGCTACA AACAGGCTCG CTTGACGCCG CCGAATGGGT TGGGCCAGTT AACGATCTCG CCTTTGGTTT GCATAAAGTC GCGAAATATT ATTACTATCC CGGTTGGCAT GAACCTGGTT CCAATATGGA ATTTTTGATC AACAAAGCCG CCTTTGAGAG TCTTCCCGAA GATTTGCAAA CTGTCGTTAA AACAGCGGCC CGTGCTATCA ATCAAGATAT GTTGGATGAA TACACCACGA GCAATGTCAC CGCCCTCGAA ACCCTCGTTA AAGAAGAAGG TGTCGAGCTT AGGGCTTTTC CGCCTGCGGT GTTAACCGAA CTTGAGCGGA TCTCACATCA GGTGATTGGA GAACAAGCGG AACAAGATCC TATGATGGGC AAGGTGTACC GTGCTTATCA TGCTTATGAA CAGGGAGTGC GTGAATACCA TAAGATTTCT GAGGACGCAT ACAGCCAGCA ACGGCAGCAT TAA
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Protein sequence | MRYLGGLLFT VLFFGATGCN PSSQHAEPIS KASITDAPPV KQVIEWRLAT SWPKNFPGLG MAPERFATLV NDMSHGQLRI TVHGAGELMP AFAVFDGVSQ GKIQMAHAAS YYWKGKTPAS QFFSSIPFGM TAQEMNGWLH YGGMALWEEV YRPFGIIPLA GGNTGMQMGG WFNKPINTIA DFKGLKIRMP GLGGEVLKRV GAVPVNMAGR ELFSALQTGS LDAAEWVGPV NDLAFGLHKV AKYYYYPGWH EPGSNMEFLI NKAAFESLPE DLQTVVKTAA RAINQDMLDE YTTSNVTALE TLVKEEGVEL RAFPPAVLTE LERISHQVIG EQAEQDPMMG KVYRAYHAYE QGVREYHKIS EDAYSQQRQH
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