| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1055 |
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| Symbol | |
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| ID | 1168894 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 1093490 |
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| End bp | 1094878 |
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| Gene Length | 1389 bp |
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| Protein Length | 462 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637343013 |
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| Product | sensory box protein |
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| Protein accession | NP_716682 |
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| Protein GI | 24372640 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGCAAAACG ATGGATATAC TTCACTTGGT CGCTTTATTG ATTTGTTATT AGATGCCATC
TGTGTGGTGG ATAAATCAGG GCGATTTGAA TTTGTGAGTG CTGGTGCTGA ACGTATTTTT
GGTTACACAT CCGATGAAAT GATTGGGATG CAGGTGTTGG ATTTAGTTCT GCCAGAAGAT
CGTGAACGCA CCCTTGCAGC TGCCGAAGAA ATTATGGCGG GCCGATACCA ACTCGATTTT
GAAAATCGTT ATGTTCGCAA AGATGGTAGC ATTGTGGATA TTCTCTGGTC TGCCCGTTGG
TCTGAGGAGT ATCAGCAGCG CGTTGCTGTG GCTCGCGACA TCACTAAGCA TAAACTTGCT
GAGCGTCGAC AAGCGGCCTT ATATGAGATA TCCGAAGCGG TTCATGTAGC CGAGGATTTG
CTATCACTTT ACAGCCATAT TCATCAGATA ATTGCAAAGC TGTTACCTGC GGAAAATTTT
TCCATCGCGC TCTATGACCA AGATGTAAAT CAATTAGATT TTCCCTATAG TGTGTCGGTG
ACCGACAAAA CTAGCGCTCA CATTGGCAAT ATTAATTATT TTGCTGAGCA GATTATTCAA
ACGGGTGAAT CCTTACTCTT TTGCCCGATG TCAAACACGC TTTCTTCGCC ATTAAATTCA
ACCGTTAAAG ATTCCCATAT CAGTTGGCTC GGTGTACCTC TGAAATTGCA TAAGGGTGTC
ATTGGCGCCT TGATTATGCT TAGCACGCCA GGTTCGAGGA CCTATACCTC ACAGGATTGC
GAGCTGGTTG AGTTTGTTTC ATCTCAAATC GCTTTTGCCA TTGAACGTCG TCAAATGTTG
GCGCGCTTAG AGCAAATCGC GCTCTACGAC CAATTGACTC ATTTGCCCAA TAGAGAGTTA
TTTTACGATA GATTTCAAAA GGCTTTATCT CGTTCGCATC GAGAGTCGAG TTATTTCTCC
TTATTGTATT TAGACTTAGA TAAGTTTAAA TGGGTTAACG ACACTTACGG ACATGGCGTG
GGGGATTTGT TGTTACAGAT TACCGCACAA AGGCTTCTTG GTTGTGTGAG AGCGTCAGAT
ACGGTCGCAC GTTTTGGTGG TGATGAGTTT GTGATTTTGC TTGAGCGAGT TGACTCTGCA
CACAACACTT TGCTCGTCGC CCATAAAGTA CTGGAAGCAT TAAACCAGCC TTTTGAGCTT
ACAGAGCAAC AACTTTATGT TTTTCCTAGT ATTGGCGTAG CTCTGTATCC TGAGCATGGC
AAAGATGAAC AACAACTCTT ATCCTGTGCT GATGCTGCGA TGTATAAGGC AAAAAAGAAT
GGTGGTAATC GTATTGAGTT GGGATATCAC GGGTTGAGGG GGAAGCACGT AGAGGTGTTC
ACATCCTAA
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| Protein sequence | MQNDGYTSLG RFIDLLLDAI CVVDKSGRFE FVSAGAERIF GYTSDEMIGM QVLDLVLPED
RERTLAAAEE IMAGRYQLDF ENRYVRKDGS IVDILWSARW SEEYQQRVAV ARDITKHKLA
ERRQAALYEI SEAVHVAEDL LSLYSHIHQI IAKLLPAENF SIALYDQDVN QLDFPYSVSV
TDKTSAHIGN INYFAEQIIQ TGESLLFCPM SNTLSSPLNS TVKDSHISWL GVPLKLHKGV
IGALIMLSTP GSRTYTSQDC ELVEFVSSQI AFAIERRQML ARLEQIALYD QLTHLPNREL
FYDRFQKALS RSHRESSYFS LLYLDLDKFK WVNDTYGHGV GDLLLQITAQ RLLGCVRASD
TVARFGGDEF VILLERVDSA HNTLLVAHKV LEALNQPFEL TEQQLYVFPS IGVALYPEHG
KDEQQLLSCA DAAMYKAKKN GGNRIELGYH GLRGKHVEVF TS
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