Gene SO_1035 details

Gene Information

• Locus tag: SO_1035
• Symbol: cobT
• ID: 1168874
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 1074417
• End bp: 1075469
• Gene Length: 1053 bp
• Protein Length: 350 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 637342994
• Product: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
• Protein accession: NP_716663
• Protein GI: 24372621
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG2038] NaMN:DMB phosphoribosyltransferase
• TIGRFAM ID: [TIGR03160] nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTCAAT CAAGCCTGTC ATTTCAAATC GAGCCTGTGA GTAAAGCGCA GGATCAGGTT 
ATTCAACAGA AAATCGATCT TAAGACTAAG CCGCCCGGTG CCTTAGGGAT GCTAGAATCC 
TTAGCTCTGC AAATCGCTCG CATCCAAGGG CCGCAGCAAT TGCAGATCGT CAAACCCACC 
ATGTTGGTAT TTGCGGGGGA TCATGGCATT GCAGCCGAAG GGGTTTCAAT TGCCCCAAGT 
GAAGTGACCC ACCAAATGGT ACAAAACTTT GCTGAAGGCG GCGCGGCCAT CAATGTGTTT 
TGTCGGCAAT TAGGCTTAAC GCTTGAAGTG ATTGATTGCG GTATTCTCAC CCCTGTTGAG 
GGTGTTGAAG GGATTATCGA TCAACGCCTT GGTGCGGGTA CTGGCGCTAT TCACTTAGAA 
CCCGCTATGT CTTTGGATTG CGTAGATAAA GGTTTTGCCA TGGCGCGGGA GTTAATTGAG 
CGTCACCATC AAGCGGGCTG TAATCTGGTC GCGTTTGGTG AAATGGGTAT TGGCAACACT 
TCCTCTGCGG CGGCGATTAT GGCGGCGATT ATGCAGTTAG AAGTGGCCGA TTGTGTGGGT 
CGTGGCACGG GGATCAATAG TGAGACCTTA GCGCGTAAGT TAACGCTGGT TGAACTGGCG 
CTGCTGTCGC ATCAAAGTGC CATGACGGGG CCAAAACAAG TGCTGGCGTG TCTTGGTGGA 
TTTGAAATTG TGCAAATGAC TGGCGCAATG CTGGCTGCAG CCGAGCGGAA AATGTTGGTG 
GTTGTGGATG GTTTTATCGC GACTGCCGCC GCGTTAGTGG CAGTGACTAT CAATGCTAAT 
GTGCGGGATT ATCTGATTTT TGCCCATCGC TCCGAGGAGC AAGGTCATCA ACGCATGCTG 
GAACATTTAC AGGCTAAACC CTTGTTATCT TTGGGCCTGA GATTAGGTGA AGGCACAGGC 
GCCGCCCTAG CATTGCCGTT AATTCAAGCT GCAGCAAATT TTTACAATCA AATGGCGAGT 
TTTAGTGATG CTGGGATTGA GGCTGTTGTA TGA 

 

Protein sequence

MSQSSLSFQI EPVSKAQDQV IQQKIDLKTK PPGALGMLES LALQIARIQG PQQLQIVKPT 
MLVFAGDHGI AAEGVSIAPS EVTHQMVQNF AEGGAAINVF CRQLGLTLEV IDCGILTPVE 
GVEGIIDQRL GAGTGAIHLE PAMSLDCVDK GFAMARELIE RHHQAGCNLV AFGEMGIGNT 
SSAAAIMAAI MQLEVADCVG RGTGINSETL ARKLTLVELA LLSHQSAMTG PKQVLACLGG 
FEIVQMTGAM LAAAERKMLV VVDGFIATAA ALVAVTINAN VRDYLIFAHR SEEQGHQRML 
EHLQAKPLLS LGLRLGEGTG AALALPLIQA AANFYNQMAS FSDAGIEAVV