| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1030 |
|---|
| Symbol | metH |
|---|
| ID | 1168870 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 1066803 |
|---|
| End bp | 1070537 |
|---|
| Gene Length | 3735 bp |
|---|
| Protein Length | 1244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 637342990 |
|---|
| Product | B12-dependent methionine synthase |
|---|
| Protein accession | NP_716658 |
|---|
| Protein GI | 24372616 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
|---|
| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGATAT CACCCAATCG AGCGAGCCAC ACACTGGCAG ACATTCGTAA CCAGCTGTCG
ACGCGCATTC TGATCTTAGA CGGTGCCATG GGCACGATGA TCCAAGGCTA CAAGCTGGAA
GAAGCCGATT ATCGCGGCGA GCGTTTCAAG GATTGGCATA CCGATGTAAA GGGTAATAAC
GACCTGTTAG TCCTGACTCA GCCACATATT ATCAAACAAA TTCACACCGA CTACTTATTA
GCCGGTGCCG ATATTATTGA AACCAATACC TTTAACGCCA CCACTATCGC CATGGCCGAT
TATGACATGC AGTCATTGTC CGCCGAAATT AACCGCGAAG GCGCGCGCCT TGCGCGTGAG
GCCTGTGATG CAATCGAACA GGCCACAGGC AAGCCACGTT ACGTCGCTGG TGTGTTAGGG
CCCACTAACC GTACCTGCTC TATCAGCCCC GATGTGAACG ACCCTGGCTT TCGTAATATC
CACTTCGATG AGTTAGTGAC CGCTTACTGC GAATCGACCC GCGCGCTGAT TGAGGGCGGT
GCCGATATCA TTATGGTCGA GACCATTTTC GATACCTTAA ACGCCAAGGC AGCGCTATTT
GCCATCGAAA CCGTATTCGA TGAACTGTTT GGCGCTAACT CGCCTGCGCG TTTGCCAGTG
ATGATCTCCG GCACCATTAC CGATGCCTCG GGCCGTACCC TGACCGGACA AACCACCGAA
GCCTTTTATA ACTCCCTTCG CCATATCAAG CCGTTATCTA TCGGCCTTAA CTGCGCCCTT
GGGCCAAAAG AGCTGCGTCC CTACGTTGAA GAACTGTCAC GCATCGCCGA ATGTTATGTG
TCGGCGCACC CTAACGCAGG TTTACCAAAC GAGTTTGGCG GTTACGATGA AACCCCAGAG
GACATGGCCA AGGTTATCCA AGAATGGGCC CGTGAAGGCA TGCTCAACAT TATCGGCGGC
TGCTGTGGTA GCACGCCCGA GCATATTAAG GTCATTCGTG AAGCCGTGGA GCAGTTTGCA
CCGCGCGTAT TACCCGAGAT CCCTGTCGCC TGTCGCCTCG CGGGTTTGGA ACCGCTCACT
ATCGACGCCC AAACCCTGTT TGTGAACGTG GGCGAGCGCA CTAACGTTAC TGGCTCGGCC
AAATTTTTAA AGCTGATTAA AGAAGGCAAG TTCGAGCAAG CGCTCGACGT CGCCCGTGAA
CAGGTAGAAA GCGGCGCGCA GATCATCGAC ATCAACATGG ACGAAGGCAT GCTTGATGGC
GTGGAGATCA TGCACAAGTT TTTAAACTTG ATCGCCTCTG AGCCAGATAT CAGCCGCGTG
CCGATTATGA TCGACTCCTC GAAGTGGGAA GTGATTGAAG CGGGCCTCAA ATGTATTCAA
GGCAAAGGCA TTGTTAACTC AATCTCCTTG AAGGAAGGCG AAGAGAAGTT TATCGAGCAA
GCGACCCTCG TTAAACGCTA TGGCGCAGCA GCCATTATTA TGGCGTTCGA CGAGCAAGGC
CAAGCCGACA CTAAAGCACG CAAAGTCGAG ATCTGTACCC GCGCCTACCG CGTGCTGGTC
GATAAGGTGG GTTTCCCGCC CGAAGACATT ATCTTCGACC CGAATATCTT CGCGATTGCC
ACAGGTATCG ATGAGCACGA TAACTATGCT GTCGATTTTA TTGATGCCAT TAAAGAGATT
AAAGCCACCC TGCCCCATGC AATGATTTCC GGCGGGGTGT CGAACGTGTC GTTCTCCTTC
CGCGGTAACA ACCCAGTGCG TGAGGCGATT CACGCGGTAT TTTTGTACCA CGCCATTAAA
GTCGGCATGG ATATGGGGAT TGTCAACGCG GGCCAATTAG CGATTTTTGA CGATATCGAC
CCCGAGCTTA AAGTGCGGGT CGAAAACGTG GTGCTCAACC TACCTTGCCC GGTTGAAGGC
TCGAACAATA CCGAGCAATT GCTTGAGATT GCTGAAAAAT TCCGTGGCGA TGGTTCAAGT
AGCGCCAAAA AAGAAGATTT AGAATGGCGC TCATGGCCTG TTAATCAGCG TTTAGCCCAT
GCGCTGGTCA AAGGCATCAC CGAGTTTATT GATGAAGATA CCGAAGCCGC TCGCCAAGCC
GCCTCACGTC CGCTGGATGT GATTGAAGGC CCGCTGATGG ACGGCATGAA TATCGTCGGC
GACCTGTTTG GCTCGGGCAA AATGTTCCTG CCACAGGTGG TCAAATCCGC GCGGGTGATG
AAAAAGGCCG TGGCCTACCT CAATCCCTTT ATTGAAAAGG AAAAAGTCGC AGGTCAGTCG
AACGGTAAGA TTTTGATGGT GACCGTAAAA AGCGATGTGC ACGATATCGG CAAAAATATT
GTTGGCGTGG TACTCGCCTG TAATGGCTTT GAAGTGTTCG ATTTAGGCGT GATGGTGTCG
GTAGAGCGCA TTCTTGAGGC GGTGAAAGAA CACAATATCG ATATTATCGG CATGTCTGGG
CTGATTACCC CAAGCCTTGA TGAGATGGTG CATAACGTCA AAACCTTCCA CCGTGAAGGC
CTCACCATTC CGGCGATTAT CGGCGGCGCA ACCTGCTCGA AAATCCATAC GGCGGTGAAG
ATTGCGCCCC ATTATCCCCA TGGCGCGATT TACATTGCCG ACGCCTCCCG CGCCGTGCCC
ATGGTCAGCA AACTGGTCAA TAACGAAACC CGCCAAGCAA CCATTGATGA AACCTATGCC
GAGTACGACG ATATGCGCAC CAAGCGTTTA TCCCAAGCTA AGCGTAAGGA AATCGTCTCG
CTAGAGGCCG CCCGCGAAAA CCGCTGCCAG CACGACTGGG CCAATTACAG CCCATTTAAG
CCAAACGTAC TCGGTCGCCA AGTGTTTGAT GATTATCCAT TAACCGATTT AGTCGACCGT
ATAGACTGGA CGCCGTTCTT CCGCGCGTGG GAGCTGCACG GCCATTACCC TGAAATCTTA
AGCGATAAAG TGGTGGGCGT TGAGGCGCAA AAACTGTTTA GCGACGGCAA GGCGATGCTT
AAAAAAATCA TCGAAGAAAA GTGGCTCACC GCCAAGGGCG TGATTGGGCT GTTTCCCGCT
AACACAGTTG GCTTTGATGA TATCGAGCTT TATACCGACG AGACTCGCAC AGAGGTTGAG
CTGACCACTC ATCACCTGCG GATGCAGCTT GAGCGGGTGG GTAACGATAA CTTCTGTCTG
GCCGATTTTG TCGCGCCCAA AGACAGCGGC GTTGCCGACT ATATGGGCGG CTTTGCGGTC
ACCGCAGGTC ATGGGATTGA TGAGCATGTC GCCCGCTTTG AGGCAAATCA TGATGACTAC
AACGCCATTA TGCTCAAATG CTTAGCCGAC CGTTTAGCCG AAGCCTTTGC CGAGCGGATG
CACGAGCGCG TACGTAAAGA GTTTTGGGGG TATGCCGCCG ATGAGCAGCT CGATAACGAG
GCGTTAATTC GCGAAAAATA CAAGGGCATT CGCCCCGCAC CGGGTTACCC CGCTTGCCCG
GATCACACCG AAAAAGGCCT GCTGTGGGAA CTGTTAAAGC CGAATGAAAC CATCGACTTA
AACATTACCG AAAGCTACGC CATGTTCCCC ACCGCCGCAG TATCTGGCTG GTATTTCGCC
CACCCGAAAT CCCGCTACTT TGGCGTGAGC AATATTGGTC GCGATCAGGT GGAGGATTAC
GCTAAGCGCA AGGGGATGAC TGTTGCCGAG ACGGAGAAGT GGCTGGCGCC AGTGTTGGAT
TATGACCCTG AATAG
|
|---|
| Protein sequence | MAISPNRASH TLADIRNQLS TRILILDGAM GTMIQGYKLE EADYRGERFK DWHTDVKGNN
DLLVLTQPHI IKQIHTDYLL AGADIIETNT FNATTIAMAD YDMQSLSAEI NREGARLARE
ACDAIEQATG KPRYVAGVLG PTNRTCSISP DVNDPGFRNI HFDELVTAYC ESTRALIEGG
ADIIMVETIF DTLNAKAALF AIETVFDELF GANSPARLPV MISGTITDAS GRTLTGQTTE
AFYNSLRHIK PLSIGLNCAL GPKELRPYVE ELSRIAECYV SAHPNAGLPN EFGGYDETPE
DMAKVIQEWA REGMLNIIGG CCGSTPEHIK VIREAVEQFA PRVLPEIPVA CRLAGLEPLT
IDAQTLFVNV GERTNVTGSA KFLKLIKEGK FEQALDVARE QVESGAQIID INMDEGMLDG
VEIMHKFLNL IASEPDISRV PIMIDSSKWE VIEAGLKCIQ GKGIVNSISL KEGEEKFIEQ
ATLVKRYGAA AIIMAFDEQG QADTKARKVE ICTRAYRVLV DKVGFPPEDI IFDPNIFAIA
TGIDEHDNYA VDFIDAIKEI KATLPHAMIS GGVSNVSFSF RGNNPVREAI HAVFLYHAIK
VGMDMGIVNA GQLAIFDDID PELKVRVENV VLNLPCPVEG SNNTEQLLEI AEKFRGDGSS
SAKKEDLEWR SWPVNQRLAH ALVKGITEFI DEDTEAARQA ASRPLDVIEG PLMDGMNIVG
DLFGSGKMFL PQVVKSARVM KKAVAYLNPF IEKEKVAGQS NGKILMVTVK SDVHDIGKNI
VGVVLACNGF EVFDLGVMVS VERILEAVKE HNIDIIGMSG LITPSLDEMV HNVKTFHREG
LTIPAIIGGA TCSKIHTAVK IAPHYPHGAI YIADASRAVP MVSKLVNNET RQATIDETYA
EYDDMRTKRL SQAKRKEIVS LEAARENRCQ HDWANYSPFK PNVLGRQVFD DYPLTDLVDR
IDWTPFFRAW ELHGHYPEIL SDKVVGVEAQ KLFSDGKAML KKIIEEKWLT AKGVIGLFPA
NTVGFDDIEL YTDETRTEVE LTTHHLRMQL ERVGNDNFCL ADFVAPKDSG VADYMGGFAV
TAGHGIDEHV ARFEANHDDY NAIMLKCLAD RLAEAFAERM HERVRKEFWG YAADEQLDNE
ALIREKYKGI RPAPGYPACP DHTEKGLLWE LLKPNETIDL NITESYAMFP TAAVSGWYFA
HPKSRYFGVS NIGRDQVEDY AKRKGMTVAE TEKWLAPVLD YDPE
|
|---|
| |