| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1000 |
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| Symbol | |
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| ID | 1168841 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 1031124 |
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| End bp | 1032710 |
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| Gene Length | 1587 bp |
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| Protein Length | 528 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637342961 |
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| Product | rhomboid family protein |
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| Protein accession | NP_716628 |
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| Protein GI | 24372586 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATGATA TACGTGTGGC GTTAGTATTT AAAAAACTCC AACTGATTTA TGTGCCTTTT
CTATTACTTA GTCTGTTATT TGTCTCAGGT TACAGCTTGC TGCACTGGTT GTTGCTGATC
AAGCTGCAAC TGGTGAGTAT TGATGAATCC CTTGTTAACT TTTGGCTGCC GATGCTATTG
CCTTGGCCCT TGTTGTTTTT CTATTTAAGA CCAAGGCTTA AGTTATGCCA CTTTACTAAA
AGTAATAGCC GCTTTATTTA TCTATTGATT GCTTCGCTGT TACTGGCGGT GCCAACTATA
GTGGCGCAGG AGTACCTAAA TAGCGCAACC GGTAAGTTGA CACAGCTTGA TTCGATCAAC
GAGTTATCAC TACAGCCACA GACCAAGTAT TACCAATTAA AACAGTTTTA TATCGATAAA
AAGTACATAG GCGTACAGCG TAATATTGAG CCAGTGGGAA AGGGTAATAA TGAGCTACAA
ATGAGTCTGT ATGTTGCCAT GCCGATTTTT GCCAGTCGCA GTGAGAGTTG GCGGGAAGGG
GCAAAGGGCA TAGCTTGGTA TGGTAAGCAC TATCAGCAGA CGATTAGCCA TAAACTCGAA
AAACATGAAA AAGAATCACT ATATCAGGAG TTTATTCATC AAATTCAGCA AGAGTTTAAT
GGGTTTAATC CCGATGATTT TGTCTATTTT GAGCGTATAG GCCCTTCTAG TCGTTACACT
CAACTATTAA TGGCTGCTCA AAAAAGCACT GTGTACCATG ACGCCTATCA AACGATCTTA
ATGCCAGTGA ATCAGCCTTT TGAAGCACGT AATGGGCATA AACTGGCTTG GATGCTGGGA
TGGTTAAGCT TTGGCGCTAT TCTCTGGTTG TTGATGAGTC TAATGTTAAC ATTGGATGGC
ACTCAACTAG CACCAAAAGC CCTCGCTGCG AAGTTAACAA CGGCCGAACC CAAGGCTGAG
TTTTATGCTT TTTTAGCTGA ATTTAAACCT AGGGTTGGCT TTGTGATCAC GCCCATTTTG
CTCTTGAGCA AGGTCCTGAT ATTTATGTTG ATGGTGTTTG CGAGCCATCA CTTTATTACC
TTACCTAATA GCGTGTTACT CGACTGGGGA GCTAACCTGC GTCAACTGGT GCTTGACCAG
CAAGTCTGGC GTTTAATCAG CAATGTGTTT TTACATGGCG GTTTAATGCA TCTGATTTTT
AACCTCTATG GGCTATTTTT TGCGGGCATT TTTTTAGAAC CGTTACTCGG CAAATGGCGT
TTACTTGGGG TTTATCTGAT GAGTGGTCTA GCAGCGAGCA TTGCCAGTAT TAGTTGGTAC
GAGGCGACCA TTAGCATCGG CGCCTCGGGT GCCATTATGG GATTATTTGG CGTGTTGATC
ATGTGGATTT GGATGGGGTC CCTGCCCTTA GCCACCCATA TGCTGCTGGC ATTACATCTC
ACACTGTTCG TATCCGCAAG CTTAGTGATG GGGCTATTGG GCGGTGTGGA TAATGCGGCG
CATCTAGGTG GTTTAGGGAG TGGTTTGTTA TTGGGATGCG TTTTACGGCC AATAGCGCTG
AATCAAATGA ATAAAAAGCC GAGGTAA
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| Protein sequence | MDDIRVALVF KKLQLIYVPF LLLSLLFVSG YSLLHWLLLI KLQLVSIDES LVNFWLPMLL
PWPLLFFYLR PRLKLCHFTK SNSRFIYLLI ASLLLAVPTI VAQEYLNSAT GKLTQLDSIN
ELSLQPQTKY YQLKQFYIDK KYIGVQRNIE PVGKGNNELQ MSLYVAMPIF ASRSESWREG
AKGIAWYGKH YQQTISHKLE KHEKESLYQE FIHQIQQEFN GFNPDDFVYF ERIGPSSRYT
QLLMAAQKST VYHDAYQTIL MPVNQPFEAR NGHKLAWMLG WLSFGAILWL LMSLMLTLDG
TQLAPKALAA KLTTAEPKAE FYAFLAEFKP RVGFVITPIL LLSKVLIFML MVFASHHFIT
LPNSVLLDWG ANLRQLVLDQ QVWRLISNVF LHGGLMHLIF NLYGLFFAGI FLEPLLGKWR
LLGVYLMSGL AASIASISWY EATISIGASG AIMGLFGVLI MWIWMGSLPL ATHMLLALHL
TLFVSASLVM GLLGGVDNAA HLGGLGSGLL LGCVLRPIAL NQMNKKPR
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