| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0988 |
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| Symbol | |
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| ID | 1168830 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 1016861 |
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| End bp | 1021147 |
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| Gene Length | 4287 bp |
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| Protein Length | 1428 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637342951 |
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| Product | formate dehydrogenase, alpha subunit |
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| Protein accession | NP_716617 |
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| Protein GI | 24372575 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases
[COG3383] Uncharacterized anaerobic dehydrogenase |
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| TIGRFAM ID | [TIGR01591] formate dehydrogenase, alpha subunit, archaeal-type |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATAGAAC TTCGAATCGA CAATAAGATA GTCTCGGCCG AACCGAGCGA TAACCTATTA
CACGCAGCCC GTAAGGCGGG TATTGCTATT CCCAGCCTGT GCGATCCCAC TGACGCCTCA
CGGCAATTGG ACACGCAAGC CCATGCCGAA AAGCAGGACT GTAACCTCTG TCTGGTGCAA
ATCGAAAATA GCGATGCCAG CCTACGCTGT GTTAAAGCCT GTGAAACCCC AGCCCAAACA
GGCATGAAGG TCATCACCCA ATCGGCGTTT TTAACCAAAC AACGCCAAGC AGCACTGAAC
GCTATTTTGA GCGATCACTT TGCCGACTGT GAGGCGCCCT GCCAACAAGC CTGCCCAGCG
GGTGTTGATG TGCAGCGTTA TCTGTACCAC ATTGCCCAAG GTGACCACAC TCAAGCGGTT
AAAGTCATTA AAGAAACATT GCCACTGCCA CTGTCGATTG GCCGAGTTTG CCCCGCGTTT
TGCGAAACCG AATGCCGCCG CGGCCTCATC GACGACCCGA TTGCCATCCG CCAACTTAAG
CGCCATGCCG CCGATTTAGA TTTAGCCGAT GACGAGCACG GCAATAGTTA TCAACCGCCA
CGCCTCGCAG ACACTGGCAA GAAAATTGCG ATTATTGGCT CTGGCCCAGC GGGCTTAAGC
GCGGGTTATT ACCTGTCTAA CCAAGGGCAT AATATTGAGA TTTTTGAGGC CATGCCCAAG
GCCGGTGGTT GGCTGCGCTA CGGTATTCCC GAATACCGTT TACCCAAAGC GATTCTCGAT
AAAGAAATTG AGTTGCTGTG TCGTAATGGG TTAACCATTC ATACCCAAAT GCGCCTAGGT
CATGAGATCC ATTTAAACCA GCTGATCACC GATTTTGATG CAGTGTGCCT TGCCATCGGC
GCCCAAAAAG CAGTGCCAAT GCACTATAAA GGCTCCGAGC TTGCTGGCTG CTATCTTGGG
GTGGATTTTC TTAAGGATCA TTGCCTCGAT AAGCAATTGA AGCTTGGTAA AAAAGTGGCG
GTAATTGGCG GCGGCAACAC CGCCATAGAT TGTGCTCGCA CAGCGGTGCG CGAAGGCTGC
GATGTCACCT TAATCTACCG CCGTACCCGC GCCGAAATGC CCGCTGAAGC CTACGAAGTG
CACGAGGCCG AAGTTGAAGG GGTTAAGTTT CACTTCTTAA CCAATCCACT TGAAAACCAT
AGTGATGCCG ACGGTCGAGT GCAGTCGGTC ACCTTTAGCA AAATGACGCT CGGCGAAGCC
GATGCCTCGG GCAGACGTGC GCCAGTGGAC ACGGGGGAAA CCTTTACCGA AGCCTTTGAT
ACAGTGATCG CCGCCGTATC TCAAGCGCCA GATCTGAGCT TTATGCAAGA TCCTAAAGGA
CAGCTTAGCC ATGGCGAACT GGCGCTGAGC CGTTGGAACA CACTAATGGG TTGTGAGCAA
ACCATGTCAT CGGGCGTGGA AAAGCTGTTT GTGATGGGCG ATGCCCGCCG CGGCCCAGCC
ACCGCCGTTG CCGCCATTGG TGATGGCCGA AAGGCAGCAA AAGCCATTGA TAAAATGCTT
CAAATTGGCC TTAGCTGCGA TTTGCATGCC CATGAATTTA ACTCGGTAAA AACCATTCCG
GGCTCCCTTA AACAGGCTGA GGTCAAATCA GCAGAAGCAA GTTCACCCCT CTACCCCCAT
ACAAAACGTC AGCCCCGCTT AAAAATGCCC GAACTCACGG CGCTGCAACG ACTACTCAAT
TACAGTGAAG TAGAATTGGG CTTTCCCGCA GATGCCGCCA TGCAAGAAGC GGCACGTTGC
CTTGAGTGTG CTTGCCAAGC CAATACTGAC TGTAAACTTA GGGATTACGC CACGGATTAC
GGTGTTGAGA GCAAAAGCTT AGCCACCGAA AATGCACGGT ATTTTAGCGT AGATAAGAGT
TCGCCCTTTA TTCAATTCGA TGCCAACCGT TGTATTAGCT GCGGCAAATG CGTCGATGTG
TGTCAGCAGC AGAGTGGTCA CTGCGCGATT CAATTCGCGA AAGACTCCTA CCAAGTACTG
CCGCAGAGCA TCAGTCCTGC TGATGAGCGA AGAGCCCCCA GAGTTGGCTT TAGTGCCAGC
ATGGCCGATA GCCACTGCGT ACAATGTGGT AACTGTGTGC AGGTTTGCCC AACGGGCGCG
CTGGTCGATG CGCGGGATAA ACGCCAAGGC GATTGTACAG AGTTAACAAC CGCCTCCACC
ATTTGTACTT ACTGCGGTGT CGGCTGTCGT CTCGATCTTA AAATCGACCC CAGCACCAAT
CGTATTCGCC ATATCGAAGG CAACAAAGAC TCGGTCGTTA ACCAAGGCAT GTTATGTGTT
AAAGGGCGTT TTGGCTTCGA TTTTATTCAC AGCGACAAAC GCCTAACCAC CCCACTAATA
CGTAAAAACG GCAAACTGCA ACCTTGTAGT TGGCCGGAAG CTATCGACTA TGTAGCAAAA
CGTTTAACCG AGATAAAACA AAAAGATGGC AGCAATGCCT TCGCAAGTCT CGCCTCGGCC
AAGGCCACCA ATGAAGATAA CTTTGTACTG CAAAAGTTTG TCCGTAGCGT CCTTGGCACC
AACAACATCG ACCATTGCGC CCGCCTGTGT CACTCCTCGA CCGTTACGGG CCTGCAGCAG
AGCATTGGTA GCGGCGCCAT GACCAATGAT ATTCTGAGTA TAAAGGACTC CGACGTCATT
TTTATTCTGG GTTCCGATAC CACCTGCGCC CATCCGATTA TCGCCTCAAA AATCCAGCAG
GCAGTCAACC TGTACGGCGC TCGGTTGATC GTGGCCGATC CGAAACGCGT TGGCATAGCA
GAAAAGGCCG AACTCTATGT TGCCCACAGA CCGGGCACGG ATGTGATGCT GCTCAACGCC
ATTATGGCAG AAATTATTCG CAATAATTGG CAGGATAAAG ACTATATTGC CAAGCGGACC
GAAGGCATTG AGGCACTGTA TGCCGAGCTT GCCAAGGAGG ATTACTCCCT TGAAAAAGCG
GCACTTATCA CAGGTGTTAA AGCTGAGAAT ATCGCCCGTA TTGCGCGTAC CATAGGCACG
GCGCAAAAAA CGGCGGTGTA CTACGCCATG GGGATAACCC AACATACCAC GGGGCACGAT
AACGTCACCG CCATATCTAA TCTGCAGCTA CTTTGCGGCA ATATTGGTGT GTCAGGAGCT
GGCATCAACC CACTGCGCGG CCAGAGTAAT GTGCAGGGCG CCTGCGATAT GGGCGCGCTG
CCCAACTATT TTACCGGTTA CCAAAAGGTC ACGGATATTC ATGCCAGAAT GCGCTTCGAA
AGCCATTGGC AAACTCCGTT ATCGGGGGAG ATTGGCGTCA CAGCAACCCA TATGATGCAT
GATATTGCCA AGGGCAAAAT CAACGCCTTA TATGTGATGG GTGAAAACCC AGTGCTGAGC
GATCCTGACC AAGCCCATGT GCTTAACGCC TTAAGCCAGA TTGAGTTTTT AGTTGTCCAG
GACATCTTTT TAACCGAGAC CGCTGAGCTT GCCCATGTGG TGTTGCCCGC CGCCGCTTTT
GTGGAAAAAC GCGGCCACTT TACCAACACC GAACGACGAG TACAGCGACT TGAGCAAGCG
CTTGCCTCAC CGGGTGAAGC GCTGCCCGAT TGGCAAATCG TACAAGCGAT TGCCAATGCT
ATGGGAGCAA ACTGGGATTA TAAAGATGAA GCAGCAATTT GGGCTGAAAT TAATGCATTA
ACGCCTCAGT ATCGCGGCAT TCTTTGGGAG AGATTAACCG CTGGTGAGGA TGGTCAAATC
CCTCAAGGTA TTCAATGGCC TTGTCCGGAT GAAAAGCATC CGGGAACACC GATTATGCAC
CAAGGTCAAT TCACCCGCGG TTTAGGTTTA TTTACGCCGG TCAGCTATCG CCTTCCCGCT
GAAATGCCCT GCAACGAGTA TCCACTTACG CTCTCGACAG GTCGTCTATT GGAGCAATTC
CATACGGGCA CCTTAACGCG CAAAACGCCC GGGCTGGACT TACTTGGTGC ACCTAAAGTG
ATGATTTCTG TCTACGATGC CGAACAACTC GGGATTAATA ACGGCGATAA AATTCGCCTA
ACCACCCGCC GTGGCGAGAT TGAAATTGAT GCCTTTGTGA CAAAACGCGC TCAGGCAGGC
GTACTGTTCT TACCCTTCCA TTTTGTCGAA GCCGCAGCGA ACAAACTCAC CATCAATGCA
TTAGATCCCG TGGCTTATAT CCCCGAGTAT AAAGTGTGTG CGGTAAGAGT TGAAAAGGTG
ACAAAGCAGA TGTGTGAGCC CACCTAA
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| Protein sequence | MIELRIDNKI VSAEPSDNLL HAARKAGIAI PSLCDPTDAS RQLDTQAHAE KQDCNLCLVQ
IENSDASLRC VKACETPAQT GMKVITQSAF LTKQRQAALN AILSDHFADC EAPCQQACPA
GVDVQRYLYH IAQGDHTQAV KVIKETLPLP LSIGRVCPAF CETECRRGLI DDPIAIRQLK
RHAADLDLAD DEHGNSYQPP RLADTGKKIA IIGSGPAGLS AGYYLSNQGH NIEIFEAMPK
AGGWLRYGIP EYRLPKAILD KEIELLCRNG LTIHTQMRLG HEIHLNQLIT DFDAVCLAIG
AQKAVPMHYK GSELAGCYLG VDFLKDHCLD KQLKLGKKVA VIGGGNTAID CARTAVREGC
DVTLIYRRTR AEMPAEAYEV HEAEVEGVKF HFLTNPLENH SDADGRVQSV TFSKMTLGEA
DASGRRAPVD TGETFTEAFD TVIAAVSQAP DLSFMQDPKG QLSHGELALS RWNTLMGCEQ
TMSSGVEKLF VMGDARRGPA TAVAAIGDGR KAAKAIDKML QIGLSCDLHA HEFNSVKTIP
GSLKQAEVKS AEASSPLYPH TKRQPRLKMP ELTALQRLLN YSEVELGFPA DAAMQEAARC
LECACQANTD CKLRDYATDY GVESKSLATE NARYFSVDKS SPFIQFDANR CISCGKCVDV
CQQQSGHCAI QFAKDSYQVL PQSISPADER RAPRVGFSAS MADSHCVQCG NCVQVCPTGA
LVDARDKRQG DCTELTTAST ICTYCGVGCR LDLKIDPSTN RIRHIEGNKD SVVNQGMLCV
KGRFGFDFIH SDKRLTTPLI RKNGKLQPCS WPEAIDYVAK RLTEIKQKDG SNAFASLASA
KATNEDNFVL QKFVRSVLGT NNIDHCARLC HSSTVTGLQQ SIGSGAMTND ILSIKDSDVI
FILGSDTTCA HPIIASKIQQ AVNLYGARLI VADPKRVGIA EKAELYVAHR PGTDVMLLNA
IMAEIIRNNW QDKDYIAKRT EGIEALYAEL AKEDYSLEKA ALITGVKAEN IARIARTIGT
AQKTAVYYAM GITQHTTGHD NVTAISNLQL LCGNIGVSGA GINPLRGQSN VQGACDMGAL
PNYFTGYQKV TDIHARMRFE SHWQTPLSGE IGVTATHMMH DIAKGKINAL YVMGENPVLS
DPDQAHVLNA LSQIEFLVVQ DIFLTETAEL AHVVLPAAAF VEKRGHFTNT ERRVQRLEQA
LASPGEALPD WQIVQAIANA MGANWDYKDE AAIWAEINAL TPQYRGILWE RLTAGEDGQI
PQGIQWPCPD EKHPGTPIMH QGQFTRGLGL FTPVSYRLPA EMPCNEYPLT LSTGRLLEQF
HTGTLTRKTP GLDLLGAPKV MISVYDAEQL GINNGDKIRL TTRRGEIEID AFVTKRAQAG
VLFLPFHFVE AAANKLTINA LDPVAYIPEY KVCAVRVEKV TKQMCEPT
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