Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_0980 |
Symbol | rumB |
ID | 1168823 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 1009614 |
End bp | 1010762 |
Gene Length | 1149 bp |
Protein Length | 382 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637342944 |
Product | 23S rRNA methyluridine methyltransferase |
Protein accession | NP_716609 |
Protein GI | 24372567 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCAATGTG GGTATTTTGA ACGAGGCCAA TGCCAATCCT GTCGCCATAT TAAGCTCCCG ATGGTGCAGC AATTGGCGGC GAAAACCCAA GAATTGCAAC AATTGTTAGC CCCTTTTGTT GTGAGCACTA ATACCCAATT TTTGCCACCC GTAGTGGGTG AGGACAGCGG CTTTCGTAAC AAGGCGAAAA TGGTGGTGCT TGGCGCTGCC CATGCGCCTG TGCTGGGGAT TGTCAGTCCA AATGGCGAAG CGGTTAGTCT CTGTGACTGC TTGCTGTACC CTGCAGATAT GCAAGCGTTG CTCTATCGCC TAGAGCGTTT TGTGCAGCAA GCGGGTATCC CGCCTTATCG CATTGATAAA GCCAAGGGCG AGCTTAAGTA TATTCTGCTG ACCCGAAGCC AAGTTCGTGG TGAATATATG CTGCGTTTTG TGCTGCGATC ACCCGATGCC ATCGCTCGTA TCGAACGGGA ATTACCCGCG CTGATGGCTG AATATCCACA AATCAACGTC GTGTCGGTAA ATATTCAGCC CATTCATATG GCGATCCTTG AGGGGGATGA GGAAATTTTC TTAACTGAAA ATACTCGTCT CGAAGAGCGC TTTAACGATG TGCCTTTGTT TATTCGTCCA AAAAGCTTTT TCCAAACTAA TCCACACGTT GCTGCAAAGC TGTATCAAAC CGCCCGTGAG TGGGTTGGCG AATTTGCACC AAAGTCACTG TGGGATTTAT TTTGTGGTGT GGGCGGCTTT GGCTTGCACT GCGCCTCTAA AGATATTCCG CTAACAGGCA TTGAAATCGA GGCTGAAGCG ATTGCGTGCG CTAAGATGTC AGCGCAAATG ATGGGGCTCG ATAACGTGCA GTTTATGGCG CTCGACTCTA CCGATTTTGC CAAAGGTGAT GCGGCCGCAA CCAAGCCTGA TTTAATTATT GTCAATCCGC CGCGCCGCGG GATTGGTGAG TCCCTATGTG ATGCTTTAAG TGAATTTGCC CCTAGGGCGA TTTTGTATTC TAGTTGTAAT CCTAAAACGC TGGCGAAGGA TTTAGTTCAT ATTCGTGGCT ACCAGTTAAC TCGGGTGCAA CTGTTTGATC TGTTTCCCCA CTCGGATCAC TTTGAAGTTT TAGCCATGTT GGTAAAAGAT TCGCGTTAG
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Protein sequence | MQCGYFERGQ CQSCRHIKLP MVQQLAAKTQ ELQQLLAPFV VSTNTQFLPP VVGEDSGFRN KAKMVVLGAA HAPVLGIVSP NGEAVSLCDC LLYPADMQAL LYRLERFVQQ AGIPPYRIDK AKGELKYILL TRSQVRGEYM LRFVLRSPDA IARIERELPA LMAEYPQINV VSVNIQPIHM AILEGDEEIF LTENTRLEER FNDVPLFIRP KSFFQTNPHV AAKLYQTARE WVGEFAPKSL WDLFCGVGGF GLHCASKDIP LTGIEIEAEA IACAKMSAQM MGLDNVQFMA LDSTDFAKGD AAATKPDLII VNPPRRGIGE SLCDALSEFA PRAILYSSCN PKTLAKDLVH IRGYQLTRVQ LFDLFPHSDH FEVLAMLVKD SR
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