Gene SO_0960 details

Gene Information

• Locus tag: SO_0960
• ID: 1168805
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 995569
• End bp: 996312
• Gene Length: 744 bp
• Protein Length: 247 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 637342926
• Product: spermidine synthase
• Protein accession: NP_716589
• Protein GI: 24372547
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0421] Spermidine synthase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCGACG CAATTTTGTT ACACGAAACT CACGATACAT TCGGGCCGAT CCGCGTGCTC 
GACTATGGTG ATTCGCGCGT GCTCTCCTTC GGTGACAACG ATGAACAAAG TAAAATCCTA 
AAAACAGCTC CCCATATTCC ACAGCATACC TATGTACAGG GCATGATGCT CGTCTTGTTA 
TTCTGTAAAC CCAAAAGTGC GATAGTGTTG GGTCTGGGTG GCGGTGCGCT TATCCATGTA 
CTGCGCCGAT TTGACGCAGC TATCAAGCTG ACCGCCGTAG AACTTCGCCC CACAGTTATC 
GAGCTGGCCA AGCATTACTT CCAACTACCA ATAGGTAAAA AACTGAATGT GATCAACGAT 
GATGCACTCG TCTTTATGGC ATCGGCCGAG CATAAAAAAG TGGATGTGAT TTTTGCTGAT 
ATCTACAGCG CCAAGGGCGT TAACACAGGG CAACTCTCTG CCACCTTCCT TGAGCAATGT 
ACTCAACGGA TTAAACCCAA TGGCTATTTA GTACTCAACT GCTGGAAGGA GCATAGCCAA 
AATCGTGAGT TACTGGCTGA TCTGCAACAG CATTTTGCCC ATGTAAACGC TTGCCTAACA 
AGTGGTGGAA ACTGGGTGAT TTTTGCCAGC CAAATCCCGC AATCCCTCGG CGCTTCTGCG 
CTTAAAAACC AAGCCCAAGC CCTATCACAG CAATTGGATT TTTCCCTAGA ACGCTCACTA 
ACACGTTTTG GCCCTTGGAA TTAA 

 

Protein sequence

MADAILLHET HDTFGPIRVL DYGDSRVLSF GDNDEQSKIL KTAPHIPQHT YVQGMMLVLL 
FCKPKSAIVL GLGGGALIHV LRRFDAAIKL TAVELRPTVI ELAKHYFQLP IGKKLNVIND 
DALVFMASAE HKKVDVIFAD IYSAKGVNTG QLSATFLEQC TQRIKPNGYL VLNCWKEHSQ 
NRELLADLQQ HFAHVNACLT SGGNWVIFAS QIPQSLGASA LKNQAQALSQ QLDFSLERSL 
TRFGPWN